Variant report
| Variant | rs10138105 |
|---|---|
| Chromosome Location | chr14:106018165-106018166 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr14:106017931-106018265 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:106007240..106009120-chr14:106016907..106019448,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ELK2BP | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10129859 | 1.00[CEU][hapmap] |
| rs10149190 | 0.89[AMR][1000 genomes] |
| rs12232113 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28385363 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28385498 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28464276 | 0.92[EUR][1000 genomes] |
| rs28700121 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28771143 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28785039 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28785198 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28807390 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28837201 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28888427 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35590487 | 0.83[ASW][hapmap] |
| rs61112526 | 0.83[AMR][1000 genomes] |
| rs74091235 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530813 | chr14:105607701-106453697 | Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 149 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10138105 | AL928761.1 | cis | multi-tissue | Pritchard |
Chromatin state (count:0 , 50 per page) page:
| No data |
