Variant report

Variant	rs10139439
Chromosome Location	chr14:56305459-56305460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56302735..56305640-chr14:56310752..56313567,2	MCF-7	breast:
2	chr14:56304789..56307595-chr14:56316105..56318121,2	K562	blood:
3	chr14:56300351..56302227-chr14:56304134..56305783,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10130664	0.83[ASN][1000 genomes]
rs10144952	0.81[EUR][1000 genomes]
rs11623836	1.00[ASN][1000 genomes]
rs11627644	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12590558	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12897306	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953360	1.00[ASN][1000 genomes]
rs1953362	0.83[ASN][1000 genomes]
rs1953363	1.00[ASN][1000 genomes]
rs1959092	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959096	1.00[ASN][1000 genomes]
rs1959098	1.00[ASN][1000 genomes]
rs2152289	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342593	0.83[ASN][1000 genomes]
rs2342840	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2880397	1.00[ASN][1000 genomes]
rs4901603	0.83[ASN][1000 genomes]
rs4901612	0.84[AFR][1000 genomes]
rs4901614	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573062	0.83[ASN][1000 genomes]
rs6573065	0.84[EUR][1000 genomes]
rs7142470	0.83[ASN][1000 genomes]
rs7143461	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148208	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149155	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155326	1.00[ASN][1000 genomes]
rs7156779	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8004650	0.83[ASN][1000 genomes]
rs8008648	1.00[ASN][1000 genomes]
rs8022496	1.00[ASN][1000 genomes]
rs868498	0.84[EUR][1000 genomes]
rs945275	1.00[ASN][1000 genomes]
rs9943970	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944128	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3394362	chr14:56305273-56305774	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56305400-56311600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links