Variant report

Variant	rs10140006
Chromosome Location	chr14:56585841-56585842
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56582513..56585426-chr14:56585434..56588675,3	K562	blood:

Variant related genes	Relation type
ENSG00000139946	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1041075	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1046596	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10873093	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs171339	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2010895	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241513	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241514	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs241521	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs241522	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241549	0.84[ASN][1000 genomes]
rs241551	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241552	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241554	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241556	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241558	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs241562	0.86[EUR][1000 genomes]
rs241564	0.84[EUR][1000 genomes]
rs241565	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3186565	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3850294	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3850295	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4901637	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61526546	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7149660	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150067	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8004543	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3401883	chr14:56584049-56586947	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3343418	chr14:56584224-56586772	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56583400-56587600	Active TSS	Ovary	ovary
2	chr14:56583800-56587400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr14:56584000-56586200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:56584000-56586400	Active TSS	A549	lung
5	chr14:56584000-56586600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr14:56584000-56586800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:56584000-56587000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:56584000-56587200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr14:56584000-56587200	Active TSS	Stomach Smooth Muscle	stomach
10	chr14:56584000-56587400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:56584000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:56584000-56587600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:56584200-56586000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr14:56584200-56586400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr14:56584200-56586400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr14:56584200-56586400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr14:56584200-56586400	Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr14:56584200-56586400	Active TSS	Osteobl	bone
19	chr14:56584200-56586600	Active TSS	Thymus	Thymus
20	chr14:56584200-56586600	Active TSS	NH-A	brain
21	chr14:56584200-56586800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:56584200-56586800	Active TSS	Brain Anterior Caudate	brain
23	chr14:56584200-56586800	Active TSS	NHDF-Ad	bronchial
24	chr14:56584200-56586800	Active TSS	NHLF	lung
25	chr14:56584200-56587000	Active TSS	Brain Angular Gyrus	brain
26	chr14:56584200-56587000	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr14:56584200-56587200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:56584200-56587200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:56584200-56587200	Active TSS	Colonic Mucosa	Colon
30	chr14:56584200-56587200	Active TSS	Fetal Intestine Large	intestine
31	chr14:56584200-56587200	Active TSS	Fetal Kidney	kidney
32	chr14:56584200-56587200	Active TSS	Right Atrium	heart
33	chr14:56584200-56587200	Active TSS	Right Ventricle	heart
34	chr14:56584400-56586000	Active TSS	K562	blood
35	chr14:56584400-56586200	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr14:56584400-56586200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:56584400-56586400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:56584400-56586400	Active TSS	Fetal Stomach	stomach
39	chr14:56584400-56586400	Active TSS	Spleen	Spleen
40	chr14:56584400-56586600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:56584400-56586600	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr14:56584400-56586600	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr14:56584400-56586600	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr14:56584400-56586600	Active TSS	Small Intestine	intestine
45	chr14:56584400-56586800	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr14:56584400-56586800	Active TSS	Colon Smooth Muscle	Colon
47	chr14:56584400-56587000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr14:56584400-56587200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr14:56584400-56587200	Active TSS	Aorta	Aorta
50	chr14:56584400-56587200	Active TSS	Esophagus	oesophagus

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