Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr14:106175461-106176039	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:106161457-106176992	GM12892	blood:	n/a	n/a
3	STAT5A	chr14:106175562-106175967	GM12878	blood:	n/a	n/a
4	NFIC	chr14:106173886-106175722	GM12878	blood:	n/a	n/a
5	MTA3	chr14:106173925-106176143	GM12878	blood:	n/a	n/a
6	POLR2A	chr14:106171441-106177208	GM12892	blood:	n/a	n/a
7	POU2F2	chr14:106171817-106175885	GM12878	blood:	n/a	chr14:106174671-106174683
8	TCF3	chr14:106175570-106175837	GM12878	blood:	n/a	chr14:106175715-106175731
9	POLR2A	chr14:106161382-106176102	GM12878	blood:	n/a	n/a
10	PML	chr14:106171371-106176101	GM12878	blood:	n/a	chr14:106172294-106172302
11	POLR2A	chr14:106164734-106176145	GM12878	blood:	n/a	n/a
12	BCLAF1	chr14:106173931-106176071	GM12878	blood:	n/a	chr14:106175427-106175436
13	POLR2A	chr14:106161465-106177165	GM12892	blood:	n/a	n/a
14	POLR2A	chr14:106175593-106175610	GM12878	blood:	n/a	n/a
15	POLR2A	chr14:106166599-106176124	GM12878	blood:	n/a	n/a
16	NFATC1	chr14:106175465-106176178	GM12878	blood:	n/a	n/a
17	NFATC1	chr14:106173930-106176201	GM12878	blood:	n/a	n/a
18	POLR2A	chr14:106171828-106177267	GM12892	blood:	n/a	n/a
19	POLR2A	chr14:106164703-106176176	GM12878	blood:	n/a	n/a
20	FOXM1	chr14:106174544-106175756	GM12878	blood:	n/a	n/a
21	POLR2A	chr14:106171418-106176108	GM12878	blood:	n/a	n/a
22	POLR2A	chr14:106161294-106176337	GM12878	blood:	n/a	n/a
23	POLR2A	chr14:106161746-106177141	GM12892	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM121-2	chr14:106175508-106176137	NONHSAT040379

Variant related genes	Relation type
ENSG00000253701	TF binding region
IGHA1	TF binding region

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130064	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147883	1.00[EUR][1000 genomes]
rs11552998	1.00[EUR][1000 genomes]
rs11623609	1.00[EUR][1000 genomes]
rs11845835	1.00[EUR][1000 genomes]
rs11848125	1.00[EUR][1000 genomes]
rs11851505	1.00[EUR][1000 genomes]
rs12431652	1.00[EUR][1000 genomes]
rs12431653	1.00[EUR][1000 genomes]
rs13000	1.00[EUR][1000 genomes]
rs2104053	1.00[EUR][1000 genomes]
rs2753508	1.00[EUR][1000 genomes]
rs2753557	1.00[EUR][1000 genomes]
rs28379859	1.00[EUR][1000 genomes]
rs28578923	1.00[EUR][1000 genomes]
rs28581525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582906	1.00[EUR][1000 genomes]
rs28627103	1.00[EUR][1000 genomes]
rs28719009	1.00[EUR][1000 genomes]
rs3923867	1.00[EUR][1000 genomes]
rs4983362	1.00[EUR][1000 genomes]
rs4983477	1.00[EUR][1000 genomes]
rs4983481	1.00[EUR][1000 genomes]
rs58503622	1.00[EUR][1000 genomes]
rs60701849	1.00[EUR][1000 genomes]
rs61986371	1.00[EUR][1000 genomes]
rs6576114	1.00[EUR][1000 genomes]
rs6576119	1.00[EUR][1000 genomes]
rs6576121	1.00[EUR][1000 genomes]
rs7143643	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151762	1.00[EUR][1000 genomes]
rs7494106	1.00[EUR][1000 genomes]
rs9671515	1.00[EUR][1000 genomes]
rs9671964	1.00[EUR][1000 genomes]
rs9672055	1.00[EUR][1000 genomes]
rs9672072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106173400-106180200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:106173600-106177200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:106173800-106175800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:106174400-106175800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:106174400-106177200	Flanking Active TSS	Primary B cells from peripheral blood	blood
6	chr14:106174800-106176200	Enhancers	Placenta	Placenta
7	chr14:106175000-106175800	Weak transcription	Spleen	Spleen
8	chr14:106175200-106175800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:106175200-106176200	Active TSS	GM12878-XiMat	blood

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