Variant report

Variant	rs10140063
Chromosome Location	chr14:55733677-55733678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55732991..55735732-chr14:55744653..55746589,2	MCF-7	breast:
2	chr14:55732836..55734810-chr14:55736254..55738759,2	MCF-7	breast:
3	chr14:55728321..55735089-chr14:55735819..55739586,10	K562	blood:
4	chr14:55727113..55735518-chr14:55736186..55741884,14	K562	blood:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10129505	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10134317	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10139083	0.84[ASN][1000 genomes]
rs10139337	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10139683	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140869	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10141552	0.87[ASN][1000 genomes]
rs10142803	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143136	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10145203	0.84[ASN][1000 genomes]
rs10146637	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158034	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11547116	0.81[ASN][1000 genomes]
rs11625001	0.86[ASN][1000 genomes]
rs11625423	0.84[ASN][1000 genomes]
rs11628437	0.84[ASN][1000 genomes]
rs11848456	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11848575	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12050099	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17672058	0.81[EUR][1000 genomes]
rs17672364	0.91[EUR][1000 genomes]
rs17740551	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17740741	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1972221	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2026633	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2094436	0.81[EUR][1000 genomes]
rs2147970	0.81[EUR][1000 genomes]
rs2340936	0.81[EUR][1000 genomes]
rs2880103	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35112084	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3759667	0.80[EUR][1000 genomes]
rs3825614	0.95[EUR][1000 genomes]
rs4040064	0.89[EUR][1000 genomes]
rs4366639	0.82[ASN][1000 genomes]
rs4496026	0.82[ASN][1000 genomes]
rs4580079	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56166765	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56949365	0.81[ASN][1000 genomes]
rs58260073	0.86[ASN][1000 genomes]
rs58269011	0.89[EUR][1000 genomes]
rs58458194	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59629906	0.84[ASN][1000 genomes]
rs59871474	0.81[ASN][1000 genomes]
rs60248556	0.86[ASN][1000 genomes]
rs66464079	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66476033	0.81[EUR][1000 genomes]
rs66551709	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66696758	0.85[ASN][1000 genomes]
rs67008693	0.90[EUR][1000 genomes]
rs67092614	0.81[EUR][1000 genomes]
rs67215571	0.81[EUR][1000 genomes]
rs67386901	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67416413	0.90[EUR][1000 genomes]
rs67514154	0.85[ASN][1000 genomes]
rs67588230	0.81[EUR][1000 genomes]
rs67795323	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67822108	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67958555	0.81[EUR][1000 genomes]
rs68046603	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs68138420	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140628	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7147247	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7150234	0.81[EUR][1000 genomes]
rs7151581	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7151754	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7153612	0.84[ASN][1000 genomes]
rs7153645	0.84[ASN][1000 genomes]
rs7154796	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155954	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157308	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7158861	0.81[ASN][1000 genomes]
rs7159824	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72715769	0.85[ASN][1000 genomes]
rs73263927	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8005117	0.95[EUR][1000 genomes]
rs8005450	0.81[EUR][1000 genomes]
rs8021583	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396352	chr14:55731649-55734247	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55730600-55735000	Weak transcription	HSMMtube	muscle
2	chr14:55730600-55737400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:55732600-55737400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:55733000-55735400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:55733400-55734200	Weak transcription	Fetal Lung	lung
6	chr14:55733400-55735200	Enhancers	Fetal Heart	heart

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