Variant report

Variant	rs10140517
Chromosome Location	chr14:70451445-70451446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70450323..70452764-chr14:70464697..70467120,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10140220	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10140592	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140789	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628205	0.84[ASN][1000 genomes]
rs1380433	0.84[ASN][1000 genomes]
rs170569	0.96[ASN][1000 genomes]
rs17107529	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107556	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107580	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs227418	0.96[ASN][1000 genomes]
rs227421	0.96[ASN][1000 genomes]
rs227440	0.93[EUR][1000 genomes]
rs227441	1.00[EUR][1000 genomes]
rs227443	0.93[EUR][1000 genomes]
rs7158909	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70433200-70454000	Strong transcription	Liver	Liver
2	chr14:70439000-70458800	Weak transcription	Gastric	stomach
3	chr14:70439800-70477200	Weak transcription	Spleen	Spleen
4	chr14:70441400-70451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70442200-70451800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:70447000-70454400	Genic enhancers	Hela-S3	cervix
7	chr14:70447600-70454400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:70448200-70453000	Weak transcription	Brain Germinal Matrix	brain
9	chr14:70448200-70455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:70448400-70452000	Weak transcription	HepG2	liver
11	chr14:70448400-70453400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:70448400-70453600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:70448600-70453400	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:70448800-70451800	Weak transcription	A549	lung
15	chr14:70449000-70451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:70449200-70451600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:70449600-70451800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:70449600-70451800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:70449600-70451800	Weak transcription	Brain Anterior Caudate	brain
20	chr14:70449600-70451800	Weak transcription	NHEK	skin
21	chr14:70449600-70452000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:70449600-70452000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr14:70449600-70453800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:70449800-70451800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:70449800-70451800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:70449800-70451800	Weak transcription	HMEC	breast
27	chr14:70449800-70452200	Weak transcription	Brain Angular Gyrus	brain
28	chr14:70449800-70452800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:70450000-70458600	Weak transcription	Aorta	Aorta
30	chr14:70450200-70451800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:70450600-70453200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:70450600-70453400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:70450600-70453400	Weak transcription	Brain Substantia Nigra	brain
34	chr14:70450600-70453600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:70450600-70453800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr14:70450600-70453800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr14:70450600-70454000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:70450600-70454000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:70450600-70456400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr14:70450600-70457000	Weak transcription	Fetal Brain Male	brain
41	chr14:70450600-70464800	Weak transcription	Fetal Stomach	stomach
42	chr14:70450600-70477200	Weak transcription	Fetal Brain Female	brain
43	chr14:70450800-70451800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr14:70451000-70451800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links