Variant report

Variant	rs10141334
Chromosome Location	chr14:105836141-105836142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:105836096-105836146	AG09309	skin:	n/a
2	chr14:105836096-105836146	U87	brain:	n/a
3	chr14:105836096-105836146	AG04450	lung:	fetal
4	chr14:105836096-105836146	HEK293	kidney:	embryo
5	chr14:105836096-105836146	IMR90	lung:	fetal
6	chr14:105836096-105836146	GM12891	blood:	n/a
7	chr14:105836096-105836146	A549	lung:	n/a
8	chr14:105836096-105836146	BJ	skin:	n/a
9	chr14:105836096-105836146	BE2_C	brain:	n/a
10	chr14:105836096-105836146	H1-hESC	embryonic stem cell:	embryo
11	chr14:105836096-105836146	HRE	kidney:	n/a
12	chr14:105836096-105836146	HCM	heart:	n/a
13	chr14:105836096-105836146	SK-N-MC	brain:	n/a
14	chr14:105836096-105836146	HL-60	blood:	n/a
15	chr14:105836096-105836146	ECC-1	luminal epithelium:	n/a
16	chr14:105836096-105836146	GM06990	blood:	n/a
17	chr14:105836096-105836146	HIPEpiC	eye:	n/a
18	chr14:105836096-105836146	GM12878	blood:	n/a
19	chr14:105836096-105836146	NHDF-neo	bronchial:	n/a
20	chr14:105836096-105836146	HMEC	breast:	n/a
21	chr14:105836096-105836146	GM12892	blood:	n/a
22	chr14:105836096-105836146	HepG2	liver:	n/a
23	chr14:105836096-105836146	K562	blood:	n/a
24	chr14:105836096-105836146	HCF	heart:	n/a
25	chr14:105836096-105836146	Hela-S3	cervix:	n/a
26	chr14:105836096-105836146	NH-A	brain:	n/a
27	chr14:105836096-105836146	NHBE	bronchial:	n/a
28	chr14:105836096-105836146	HUVEC	blood vessel:	n/a
29	chr14:105836096-105836146	LNCaP	prostate:	n/a
30	chr14:105836096-105836146	HNPCEpiC	eye:	n/a
31	chr14:105836096-105836146	ovcar-3	ovarian:	n/a
32	chr14:105836096-105836146	HPAEpiC	pulmonary alveolar:	n/a
33	chr14:105836096-105836146	HCPEpiC	choroid plexus:	n/a
34	chr14:105836096-105836146	AG09319	gingival:	n/a
35	chr14:105836096-105836146	HRPEpiC	eye:	n/a
36	chr14:105836096-105836146	HEEpiC	esophagus:	n/a
37	chr14:105836096-105836146	HRCEpiC	kidney:	n/a
38	chr14:105836096-105836146	AG10803	skin:	n/a
39	chr14:105836096-105836146	Jurkat	blood:	n/a
40	chr14:105836096-105836146	PFSK-1	brain:	n/a
41	chr14:105836096-105836146	RPTEC	kidney:	n/a
42	chr14:105836096-105836146	MCF-7	breast:	n/a
43	chr14:105836096-105836146	HCT-116	colon:	n/a
44	chr14:105836096-105836146	SK-N-SH	brain:	n/a
45	chr14:105836096-105836146	NT2-D1	testis:	n/a
46	chr14:105836096-105836146	CMK	blood:	n/a
47	chr14:105836096-105836146	ProgFib	skin:	n/a
48	chr14:105836096-105836146	Caco-2	colon:	n/a
49	chr14:105836096-105836146	SAEC	small airway:	n/a
50	chr14:105836096-105836146	HAEpiC	amniotic membrane:	n/a

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105832763..105834678-chr14:105835775..105838108,3	MCF-7	breast:
2	chr14:105834893..105837362-chr14:105955659..105958778,4	K562	blood:
3	chr14:105835405..105837440-chr14:105952296..105953921,2	MCF-7	breast:
4	chr14:105835990..105838531-chr14:105887072..105888868,2	K562	blood:
5	chr14:105836081..105839933-chr14:105841542..105845768,4	K562	blood:
6	chr14:105836131..105838773-chr14:105914904..105916971,2	MCF-7	breast:
7	chr14:105834429..105839243-chr14:105954962..105958915,8	MCF-7	breast:
8	chr14:105833869..105838890-chr14:105955015..105958603,6	MCF-7	breast:
9	chr14:105830268..105832387-chr14:105835786..105838233,2	K562	blood:
10	chr14:105835819..105838497-chr14:105841259..105843602,2	MCF-7	breast:
11	chr14:105834893..105839221-chr14:105955521..105958937,5	K562	blood:
12	chr14:105834074..105836312-chr14:105838638..105841381,2	MCF-7	breast:
13	chr14:105835985..105837885-chr14:105989782..105992568,2	MCF-7	breast:
14	chr14:105835152..105837242-chr14:105847808..105849887,2	K562	blood:

No data

Variant related genes	Relation type
RPS20P33	CpG island
ENSG00000257341	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000242085	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000185347	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10132353	1.00[JPT][hapmap]
rs10132438	1.00[JPT][hapmap]
rs10141048	1.00[JPT][hapmap]
rs10142682	1.00[JPT][hapmap]
rs10147378	1.00[JPT][hapmap]
rs10147674	1.00[JPT][hapmap]
rs10148379	1.00[JPT][hapmap]
rs10148455	1.00[JPT][hapmap]
rs11846567	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11847128	1.00[JPT][hapmap]
rs11849421	1.00[JPT][hapmap]
rs12101178	1.00[JPT][hapmap]
rs28444495	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450137	1.00[ASN][1000 genomes]
rs28461287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488281	0.81[AMR][1000 genomes]
rs28529001	0.81[AMR][1000 genomes]
rs28548340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4074004	1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs4076933	1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs4983411	1.00[JPT][hapmap]
rs57244820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214606	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7144362	1.00[JPT][hapmap]
rs7161158	1.00[JPT][hapmap]
rs73361060	0.81[AMR][1000 genomes]
rs8004328	1.00[JPT][hapmap]
rs8008801	1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs8010649	1.00[JPT][hapmap]
rs8010888	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8016693	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9671295	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9671890	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:105808600-105848600	Weak transcription	HSMMtube	muscle
3	chr14:105814200-105848600	Weak transcription	Left Ventricle	heart
4	chr14:105818600-105846000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:105818800-105849200	Weak transcription	A549	lung
6	chr14:105821800-105842600	Weak transcription	Fetal Brain Male	brain
7	chr14:105822000-105848800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:105822800-105847800	Weak transcription	Liver	Liver
9	chr14:105823600-105863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:105823800-105837400	Weak transcription	HSMM	muscle
11	chr14:105823800-105846200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:105823800-105849600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:105825600-105848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:105827600-105837800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:105827800-105847600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:105831000-105863800	Weak transcription	Fetal Kidney	kidney
17	chr14:105831400-105840600	Weak transcription	NHEK	skin
18	chr14:105831400-105844400	Weak transcription	Stomach Mucosa	stomach
19	chr14:105831400-105848800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:105831400-105864000	Weak transcription	Osteobl	bone
21	chr14:105831600-105837400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:105831600-105842000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:105831600-105842400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr14:105831600-105850600	Weak transcription	Fetal Heart	heart
25	chr14:105831600-105855200	Strong transcription	Fetal Stomach	stomach
26	chr14:105831600-105863200	Weak transcription	NHDF-Ad	bronchial
27	chr14:105831800-105837200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr14:105831800-105837400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:105831800-105837400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:105831800-105838600	Strong transcription	Fetal Muscle Leg	muscle
31	chr14:105831800-105838600	Strong transcription	Lung	lung
32	chr14:105831800-105838800	Strong transcription	Fetal Intestine Large	intestine
33	chr14:105832000-105837200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:105832000-105837200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr14:105832000-105838600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:105832000-105841600	Strong transcription	Fetal Intestine Small	intestine
37	chr14:105832000-105842000	Weak transcription	Fetal Thymus	thymus
38	chr14:105832200-105837000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:105832200-105849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:105832800-105836400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:105832800-105837200	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:105832800-105838600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:105832800-105838600	Strong transcription	Placenta	Placenta
44	chr14:105833000-105836400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:105833000-105836400	Strong transcription	Pancreas	Pancrea
46	chr14:105833000-105836400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr14:105833000-105841600	Strong transcription	Brain Germinal Matrix	brain
48	chr14:105833200-105836400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:105833200-105836400	Strong transcription	Gastric	stomach
50	chr14:105833200-105836400	Strong transcription	Right Ventricle	heart

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