Variant report

Variant	rs10141759
Chromosome Location	chr14:33047405-33047406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10141512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143802	1.00[YRI][hapmap]
rs10148474	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099317	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099336	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018498	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
5	chr14:33045600-33047600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:33045600-33048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:33046000-33048400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:33046000-33063000	Weak transcription	Ovary	ovary
9	chr14:33046200-33047600	Weak transcription	Brain Germinal Matrix	brain
10	chr14:33046200-33053400	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:33046200-33057000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:33046200-33058200	Weak transcription	Right Ventricle	heart
13	chr14:33046600-33061800	Weak transcription	Fetal Heart	heart
14	chr14:33047000-33047600	Strong transcription	HSMMtube	muscle
15	chr14:33047000-33048200	Enhancers	GM12878-XiMat	blood
16	chr14:33047200-33047600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:33047400-33047600	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:33047400-33047600	Enhancers	Brain Substantia Nigra	brain
19	chr14:33047400-33050800	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links