Variant report

Variant	rs10141948
Chromosome Location	chr14:22380510-22380511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10133186	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10134360	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10135950	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10138404	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10140594	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10140867	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10142327	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10142709	0.82[EUR][1000 genomes]
rs10145264	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10147668	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10147721	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10147811	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10149013	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10151696	0.82[EUR][1000 genomes]
rs11846233	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11850223	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17112180	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17112182	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17112224	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17112440	1.00[ASN][1000 genomes]
rs28422899	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28445500	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28482018	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28504176	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28515506	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28593025	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28599626	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs33998628	1.00[ASN][1000 genomes]
rs34029724	1.00[ASN][1000 genomes]
rs57520671	1.00[ASN][1000 genomes]
rs61654275	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61739521	1.00[ASN][1000 genomes]
rs61744739	1.00[ASN][1000 genomes]
rs7140665	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7140865	0.82[EUR][1000 genomes]
rs7151893	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7152068	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7153410	0.82[EUR][1000 genomes]
rs7154606	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7158678	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7161370	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73580302	1.00[ASN][1000 genomes]
rs73588484	1.00[ASN][1000 genomes]
rs73590403	1.00[ASN][1000 genomes]
rs73593035	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73593050	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73595108	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73595150	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73595152	0.82[EUR][1000 genomes]
rs74035059	1.00[ASN][1000 genomes]
rs8005480	0.82[EUR][1000 genomes]
rs8006561	0.82[EUR][1000 genomes]
rs8019865	0.82[EUR][1000 genomes]
rs9323072	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv3387723	chr14:22255284-22397765	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv430885	chr14:22267491-22975700	Enhancers Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	124 gene(s)	inside rSNPs	diseases
5	nsv524527	chr14:22288841-22387318	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv430886	chr14:22290777-22975700	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
7	nsv1045059	chr14:22299148-22911214	Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
8	nsv916328	chr14:22299151-22793429	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
9	nsv430887	chr14:22299981-23069853	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	173 gene(s)	inside rSNPs	diseases
10	nsv832742	chr14:22307760-22501748	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv533184	chr14:22322590-22964922	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
12	esv3406578	chr14:22323357-22384327	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv430888	chr14:22328266-22974256	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	118 gene(s)	inside rSNPs	diseases
14	nsv826884	chr14:22329745-23005270	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	147 gene(s)	inside rSNPs	diseases
15	nsv826885	chr14:22329745-23005311	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	147 gene(s)	inside rSNPs	diseases
16	nsv826887	chr14:22330625-22998976	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	142 gene(s)	inside rSNPs	diseases
17	nsv430889	chr14:22338141-22988571	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	134 gene(s)	inside rSNPs	diseases
18	nsv430890	chr14:22349686-22970327	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
19	nsv1038915	chr14:22352968-22991087	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	135 gene(s)	inside rSNPs	diseases
20	nsv430892	chr14:22354103-22968854	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
21	nsv901482	chr14:22356551-22392983	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv826888	chr14:22373770-23001710	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	140 gene(s)	inside rSNPs	diseases
23	nsv430893	chr14:22378542-22974256	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	114 gene(s)	inside rSNPs	diseases
24	nsv430894	chr14:22378542-22975700	Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	115 gene(s)	inside rSNPs	diseases
25	nsv430895	chr14:22379160-22946380	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
26	nsv826889	chr14:22379803-23001761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22379800-22381400	Enhancers	Fetal Thymus	thymus
2	chr14:22380000-22382200	Enhancers	Primary T cells from cord blood	blood
3	chr14:22380200-22380600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr14:22380200-22381600	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:22380200-22383200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr14:22380400-22380600	Enhancers	Primary B cells from cord blood	blood
7	chr14:22380400-22380600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr14:22380400-22380600	Enhancers	Gastric	stomach
9	chr14:22380400-22380800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr14:22380400-22381000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr14:22380400-22381200	Enhancers	Thymus	Thymus
12	chr14:22380400-22381800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:22380400-22382400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:22380400-22382400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:22380400-22386200	Enhancers	HUVEC	blood vessel

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