Variant report

Variant	rs10142031
Chromosome Location	chr14:70258270-70258271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70256847..70259062-chr14:70261401..70263473,2	K562	blood:
2	chr14:70253162..70255324-chr14:70257744..70259323,3	MCF-7	breast:
3	chr14:70256922..70258449-chr14:70268718..70271481,2	K562	blood:
4	chr14:70258156..70261059-chr14:70276205..70278349,3	MCF-7	breast:
5	chr14:70256053..70260532-chr14:70262119..70264401,5	MCF-7	breast:
6	chr14:70244657..70246723-chr14:70256430..70258319,2	K562	blood:

Variant related genes	Relation type
ENSG00000100652	Chromatin interaction
ENSG00000221060	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10130926	0.82[ASN][1000 genomes]
rs10136529	0.91[EUR][1000 genomes]
rs10142027	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142686	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10143223	0.85[ASN][1000 genomes]
rs10146537	0.80[ASN][1000 genomes]
rs10151895	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10459536	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11621916	0.81[ASN][1000 genomes]
rs11622580	0.87[ASN][1000 genomes]
rs11622925	0.87[ASN][1000 genomes]
rs11624523	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624532	0.83[ASN][1000 genomes]
rs11625731	0.87[ASN][1000 genomes]
rs11625932	0.88[ASN][1000 genomes]
rs12431573	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313388	0.94[EUR][1000 genomes]
rs17328	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953399	0.88[ASN][1000 genomes]
rs1953400	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2148503	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2148505	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2332167	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28404963	0.87[ASN][1000 genomes]
rs28437822	0.90[ASN][1000 genomes]
rs28490548	0.92[EUR][1000 genomes]
rs2877595	0.87[ASN][1000 genomes]
rs2877598	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28847646	0.84[ASN][1000 genomes]
rs3104	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3784152	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784153	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3809399	0.82[ASN][1000 genomes]
rs4646285	0.87[ASN][1000 genomes]
rs4646286	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646297	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899311	0.86[ASN][1000 genomes]
rs4899313	0.88[ASN][1000 genomes]
rs4902752	0.87[ASN][1000 genomes]
rs4902753	0.87[ASN][1000 genomes]
rs4902755	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902756	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902757	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55724465	0.90[ASN][1000 genomes]
rs55987626	0.82[ASN][1000 genomes]
rs56074637	0.82[ASN][1000 genomes]
rs57492222	0.88[ASN][1000 genomes]
rs58582364	0.90[ASN][1000 genomes]
rs59172911	0.87[ASN][1000 genomes]
rs60442313	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61356864	0.85[ASN][1000 genomes]
rs6573905	0.87[ASN][1000 genomes]
rs6573906	0.87[ASN][1000 genomes]
rs6573907	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573908	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6573909	0.95[EUR][1000 genomes]
rs7142868	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152290	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7153496	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7153985	0.87[ASN][1000 genomes]
rs7154439	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7160953	0.87[ASN][1000 genomes]
rs7161476	0.87[ASN][1000 genomes]
rs72725718	0.87[ASN][1000 genomes]
rs72725724	0.81[ASN][1000 genomes]
rs72725740	0.90[ASN][1000 genomes]
rs72725743	0.90[ASN][1000 genomes]
rs72725745	0.90[ASN][1000 genomes]
rs8005609	0.93[EUR][1000 genomes]
rs8010836	0.87[ASN][1000 genomes]
rs8011311	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8013598	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014236	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021735	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9944036	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70238200-70263600	Weak transcription	Stomach Mucosa	stomach
2	chr14:70246200-70258400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:70246200-70259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:70246400-70261800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:70246400-70264000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:70247000-70264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:70248200-70263000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
9	chr14:70248400-70264400	Weak transcription	Esophagus	oesophagus
10	chr14:70248600-70263600	Weak transcription	Right Ventricle	heart
11	chr14:70248800-70264000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:70249000-70264000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:70251800-70264200	Weak transcription	Colonic Mucosa	Colon
14	chr14:70253400-70259800	Weak transcription	Pancreas	Pancrea
15	chr14:70253400-70263400	Weak transcription	Lung	lung
16	chr14:70253400-70263600	Weak transcription	Gastric	stomach
17	chr14:70253400-70263800	Weak transcription	Brain Anterior Caudate	brain
18	chr14:70253400-70264200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:70253600-70263400	Weak transcription	Placenta	Placenta
20	chr14:70253600-70263400	Weak transcription	Left Ventricle	heart
21	chr14:70253600-70263800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:70253600-70263800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:70253800-70264000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:70254200-70263600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:70254200-70265800	Weak transcription	Spleen	Spleen
26	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:70258200-70258600	Flanking Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links