Variant report

Variant	rs1014342
Chromosome Location	chr6:12923157-12923158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12526453	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1332844	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[MEX][hapmap]
rs1953088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327620	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2327621	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2876303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34343839	0.89[EUR][1000 genomes]
rs4711863	0.92[CEU][hapmap]
rs4714955	0.89[CEU][hapmap]
rs4714988	0.83[ASN][1000 genomes]
rs4714990	0.85[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62386818	0.89[EUR][1000 genomes]
rs6458545	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6911226	0.83[AMR][1000 genomes]
rs7454157	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7739181	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7750679	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[MEX][hapmap]
rs7751826	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs7760016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7760527	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8180558	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9296512	0.92[CEU][hapmap]
rs9369640	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[MEX][hapmap];0.82[AMR][1000 genomes]
rs9369650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369652	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381494	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9381500	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9395214	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.87[AMR][1000 genomes]
rs9463278	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5202	chr6:12916229-12958517	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12912200-12929800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:12922600-12923400	Enhancers	HUES48 Cell Line	embryonic stem cell

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