Variant report

Variant	rs10143593
Chromosome Location	chr14:69896082-69896083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10083335	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129720	0.82[YRI][hapmap];0.90[AMR][1000 genomes]
rs10138313	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140273	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142144	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143710	0.81[EUR][1000 genomes]
rs10151691	0.88[ASW][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes]
rs11622711	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623094	0.82[CEU][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs11624577	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147478	0.88[AMR][1000 genomes]
rs12147967	0.88[AMR][1000 genomes]
rs12878175	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884348	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884802	0.91[ASN][1000 genomes]
rs12893282	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12895620	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455053	0.81[JPT][hapmap]
rs1466255	0.88[AMR][1000 genomes]
rs1958121	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965878	0.88[AMR][1000 genomes]
rs2085193	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100489	0.81[AMR][1000 genomes]
rs2124191	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124192	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2296722	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296724	0.88[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296725	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296727	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28401542	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28451089	0.86[AMR][1000 genomes]
rs28470369	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661733	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879441	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34405286	0.88[AMR][1000 genomes]
rs34450502	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731892	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34834622	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34840252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759770	0.82[CEU][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs3759771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899294	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902717	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902719	0.80[AMR][1000 genomes]
rs56137363	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56392460	0.88[AMR][1000 genomes]
rs56953348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553067	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67502261	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423356	0.91[ASN][1000 genomes]
rs7143858	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7147710	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150586	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs7159476	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7160248	0.88[AMR][1000 genomes]
rs8010767	0.88[AMR][1000 genomes]
rs8012954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015317	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015425	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020817	0.81[EUR][1000 genomes]
rs959242	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10143593	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
3	chr14:69885600-69899400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:69886400-69908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
7	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
9	chr14:69889600-69906400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
11	chr14:69890600-69896400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:69890600-69896600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:69890800-69896200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:69890800-69896400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:69890800-69897200	Strong transcription	Primary B cells from cord blood	blood
16	chr14:69890800-69897200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:69890800-69922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:69891200-69922800	Weak transcription	Colonic Mucosa	Colon
19	chr14:69891200-69923000	Weak transcription	NHLF	lung
20	chr14:69891400-69896800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:69891800-69896200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:69892000-69896200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:69892000-69920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:69892200-69896400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr14:69892200-69931400	Weak transcription	K562	blood
26	chr14:69892400-69896200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:69892600-69896600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr14:69892800-69896800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr14:69893000-69908600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:69893000-69919800	Weak transcription	Spleen	Spleen
31	chr14:69893000-69922800	Weak transcription	Aorta	Aorta
32	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:69893400-69898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr14:69893400-69910800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:69893400-69922200	Weak transcription	Left Ventricle	heart
36	chr14:69893400-69922400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:69893400-69922600	Weak transcription	Brain Germinal Matrix	brain
38	chr14:69893400-69922800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:69893400-69923000	Weak transcription	Lung	lung
40	chr14:69893600-69900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:69893600-69906400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr14:69893600-69908400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:69893600-69908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:69893600-69908800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:69893600-69908800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:69893600-69920200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr14:69893600-69920400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr14:69893600-69922000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:69893600-69922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:69893600-69922400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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