Variant report
| Variant | rs10143714 |
|---|---|
| Chromosome Location | chr14:37572390-37572391 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:37192459..37195312-chr14:37570603..37573601,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183032 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10129152 | 0.95[AFR][1000 genomes] |
| rs10129329 | 1.00[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap] |
| rs10129573 | 1.00[MEX][hapmap] |
| rs10130470 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs10130932 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs10133401 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs10133487 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10146430 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10146922 | 1.00[AFR][1000 genomes] |
| rs10150388 | 0.87[YRI][hapmap] |
| rs28441592 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28450426 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74045487 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74045491 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74047221 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74047222 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8007409 | 1.00[MEX][hapmap] |
| rs9630377 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050174 | chr14:37556357-37664143 | Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1043410 | chr14:37556357-37671059 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv564347 | chr14:37558794-37590164 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
