Variant report

Variant	rs10143850
Chromosome Location	chr14:32576666-32576667
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32568963..32573107-chr14:32575229..32577202,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10134888	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11849454	1.00[EUR][1000 genomes]
rs12100687	1.00[EUR][1000 genomes]
rs12100688	1.00[EUR][1000 genomes]
rs12100768	1.00[EUR][1000 genomes]
rs12100930	1.00[EUR][1000 genomes]
rs12100931	1.00[EUR][1000 genomes]
rs12101226	1.00[EUR][1000 genomes]
rs17098508	1.00[EUR][1000 genomes]
rs28765407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28802314	1.00[EUR][1000 genomes]
rs28845852	1.00[EUR][1000 genomes]
rs57218277	1.00[EUR][1000 genomes]
rs58280109	1.00[EUR][1000 genomes]
rs59021515	1.00[EUR][1000 genomes]
rs59609395	1.00[EUR][1000 genomes]
rs7140954	1.00[EUR][1000 genomes]
rs7152059	1.00[EUR][1000 genomes]
rs7157301	1.00[EUR][1000 genomes]
rs74041589	1.00[EUR][1000 genomes]
rs74041590	1.00[EUR][1000 genomes]
rs74041597	1.00[EUR][1000 genomes]
rs74041599	1.00[EUR][1000 genomes]
rs74041600	1.00[EUR][1000 genomes]
rs8012001	1.00[EUR][1000 genomes]
rs8021655	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32548000-32586200	Weak transcription	Lung	lung
2	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
3	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
4	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:32554600-32597200	Weak transcription	Gastric	stomach
6	chr14:32555000-32579600	Weak transcription	NHLF	lung
7	chr14:32562200-32579200	Weak transcription	HSMMtube	muscle
8	chr14:32562400-32578400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:32562400-32588200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:32562600-32583400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:32562600-32586600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:32562600-32595200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:32562600-32597600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:32563000-32579600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:32563000-32594000	Weak transcription	Fetal Brain Female	brain
16	chr14:32563200-32591400	Weak transcription	HUVEC	blood vessel
17	chr14:32563200-32594600	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:32563600-32583600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:32563600-32593400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:32564200-32586400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:32564200-32594000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:32564200-32594400	Weak transcription	Liver	Liver
23	chr14:32564400-32579200	Weak transcription	Osteobl	bone
24	chr14:32565400-32583000	Weak transcription	Fetal Intestine Small	intestine
25	chr14:32565400-32597200	Weak transcription	Ovary	ovary
26	chr14:32566400-32579200	Weak transcription	HSMM	muscle
27	chr14:32567400-32584200	Weak transcription	Placenta	Placenta
28	chr14:32569800-32577000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:32569800-32579000	Weak transcription	Left Ventricle	heart
30	chr14:32569800-32579600	Weak transcription	NHEK	skin
31	chr14:32569800-32586000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr14:32569800-32593000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:32569800-32594200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:32570000-32578600	Weak transcription	NH-A	brain
35	chr14:32570000-32583600	Weak transcription	Fetal Lung	lung
36	chr14:32570000-32585800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr14:32570600-32578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:32570800-32579000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:32571800-32577000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:32571800-32579000	Weak transcription	Primary B cells from cord blood	blood
41	chr14:32571800-32596800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:32571800-32597400	Weak transcription	Spleen	Spleen
43	chr14:32571800-32606800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:32571800-32614400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr14:32572000-32579600	Weak transcription	Right Ventricle	heart
46	chr14:32572000-32595400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr14:32572200-32577600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:32572200-32577600	Weak transcription	NHDF-Ad	bronchial
49	chr14:32572800-32590200	Weak transcription	Dnd41	blood
50	chr14:32574200-32586400	Weak transcription	Primary hematopoietic stem cells	blood

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