Variant report

Variant	rs10144038
Chromosome Location	chr14:70230685-70230686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10047848	1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10131362	1.00[EUR][1000 genomes]
rs10137013	1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10138453	1.00[EUR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs10148264	1.00[EUR][1000 genomes]
rs10148957	1.00[EUR][1000 genomes]
rs10149936	1.00[EUR][1000 genomes]
rs10150246	1.00[EUR][1000 genomes]
rs10151989	1.00[EUR][1000 genomes]
rs10220277	1.00[EUR][1000 genomes]
rs11847514	1.00[EUR][1000 genomes]
rs1275744	1.00[EUR][1000 genomes]
rs1275845	1.00[EUR][1000 genomes]
rs1952203	1.00[EUR][1000 genomes]
rs28435330	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs28671429	1.00[EUR][1000 genomes]
rs28757382	1.00[EUR][1000 genomes]
rs28758769	1.00[EUR][1000 genomes]
rs28879830	1.00[EUR][1000 genomes]
rs7154537	1.00[EUR][1000 genomes]
rs9805962	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70222400-70233000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:70223200-70232400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:70223400-70232400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:70228000-70231200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:70228000-70232400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:70228000-70233000	Weak transcription	NH-A	brain
7	chr14:70228200-70232400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:70228600-70231200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr14:70228600-70233000	Weak transcription	NHEK	skin
10	chr14:70228800-70231800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:70229400-70232600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:70229400-70232600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:70229600-70232600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:70230200-70232200	Weak transcription	Primary T cells from cord blood	blood
15	chr14:70230200-70233000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:70230400-70231200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:70230400-70233200	Weak transcription	Stomach Mucosa	stomach
18	chr14:70230600-70231200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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