Variant report

Variant	rs10144339
Chromosome Location	chr14:33106344-33106345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10135562	0.87[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.92[ASN][1000 genomes]
rs10141122	0.90[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10147066	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10483416	0.95[CEU][hapmap];0.96[GIH][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11844389	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11846446	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12323757	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12323763	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12323766	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12880113	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17515243	0.90[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1884619	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1956223	0.95[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34340539	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981994	0.81[CEU][hapmap]
rs7141374	0.91[EUR][1000 genomes]
rs71419918	0.96[ASN][1000 genomes]
rs71419919	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7142867	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs927062	0.95[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33101800-33107600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:33102600-33107800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:33102800-33107000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:33103200-33106800	Weak transcription	Left Ventricle	heart
6	chr14:33103200-33107800	Enhancers	Fetal Heart	heart
7	chr14:33103200-33114600	Weak transcription	Aorta	Aorta
8	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
9	chr14:33104800-33107000	Weak transcription	NH-A	brain
10	chr14:33104800-33107200	Weak transcription	Osteobl	bone
11	chr14:33104800-33116400	Weak transcription	Brain Substantia Nigra	brain
12	chr14:33105000-33106800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:33105000-33117000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:33105000-33117200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:33105200-33107000	Weak transcription	Brain Anterior Caudate	brain
16	chr14:33105200-33116000	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:33105200-33116400	Weak transcription	Brain Angular Gyrus	brain
18	chr14:33105600-33106800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:33106000-33107000	Weak transcription	NHDF-Ad	bronchial
20	chr14:33106200-33106600	Weak transcription	Right Atrium	heart
21	chr14:33106200-33107200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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