Variant report

Variant	rs10144472
Chromosome Location	chr14:35764668-35764669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35762611..35765182-chr14:35880296..35882619,2	K562	blood:
2	chr14:35757780..35767592-chr14:35866063..35878024,53	MCF-7	breast:
3	chr14:35763961..35764722-chr17:56709176..56710000,2	MCF-7	breast:
4	chr14:35761890..35767767-chr14:35871223..35875046,8	K562	blood:
5	chr14:35763080..35765371-chr14:35856574..35858405,2	MCF-7	breast:
6	chr14:35683125..35684934-chr14:35764206..35766874,2	MCF-7	breast:
7	chr14:35757192..35766588-chr14:35865950..35877395,53	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240023	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10146691	0.81[AFR][1000 genomes]
rs17103166	0.81[AFR][1000 genomes]
rs60940685	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35760600-35765200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:35761800-35767400	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr14:35762600-35774400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:35762600-35778400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:35762800-35766000	Enhancers	Fetal Lung	lung
6	chr14:35762800-35768200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr14:35762800-35778600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:35762800-35778800	Weak transcription	Aorta	Aorta
9	chr14:35763200-35764800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:35763200-35765800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:35763200-35766200	Enhancers	Fetal Brain Male	brain
12	chr14:35763200-35777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:35763200-35778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:35763200-35780000	Weak transcription	Fetal Kidney	kidney
15	chr14:35763200-35789600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:35763400-35765800	Enhancers	Spleen	Spleen
17	chr14:35763600-35765000	Weak transcription	Fetal Heart	heart
18	chr14:35763600-35765200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:35763600-35765400	Genic enhancers	Fetal Brain Female	brain
20	chr14:35763600-35775000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:35763600-35776800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:35763600-35777000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:35763600-35778800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:35763800-35764800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:35763800-35765000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:35763800-35765000	Enhancers	Primary B cells from peripheral blood	blood
27	chr14:35763800-35765200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:35763800-35766800	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:35763800-35767000	Enhancers	Left Ventricle	heart
30	chr14:35763800-35768200	Weak transcription	NH-A	brain
31	chr14:35763800-35777200	Weak transcription	Placenta	Placenta
32	chr14:35763800-35777600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:35763800-35777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:35763800-35777800	Weak transcription	HSMM	muscle
35	chr14:35763800-35778600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:35763800-35778600	Weak transcription	Colonic Mucosa	Colon
37	chr14:35763800-35778600	Weak transcription	Esophagus	oesophagus
38	chr14:35763800-35778600	Weak transcription	Ovary	ovary
39	chr14:35763800-35779200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:35764000-35764800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:35764000-35764800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:35764000-35764800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr14:35764000-35764800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:35764000-35764800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr14:35764000-35764800	Enhancers	Right Ventricle	heart
46	chr14:35764000-35765000	Enhancers	Primary T cells from cord blood	blood
47	chr14:35764000-35765000	Enhancers	Primary hematopoietic stem cells	blood
48	chr14:35764000-35765000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:35764000-35765200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:35764000-35765200	Enhancers	Right Atrium	heart

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