Variant report

Variant	rs10145323
Chromosome Location	chr14:81662747-81662748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81656301..81665753-chr14:81684174..81688927,14	MCF-7	breast:
2	chr14:81655881..81668737-chr14:81683092..81689639,25	K562	blood:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10130030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10135816	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10136239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10137342	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10140780	0.90[AFR][1000 genomes]
rs10148333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851828	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12437268	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17094177	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111611	1.00[JPT][hapmap]
rs17111627	1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs17111651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17111691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2033255	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28656130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3813536	1.00[CEU][hapmap]
rs3815952	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4640110	0.81[AFR][1000 genomes]
rs59666109	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73344366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73346377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8005919	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902117	chr14:81643800-81682392	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81637000-81683800	Weak transcription	Small Intestine	intestine
2	chr14:81638600-81670200	Weak transcription	Psoas Muscle	Psoas
3	chr14:81643800-81683200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:81644200-81683600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:81644600-81666400	Weak transcription	Stomach Mucosa	stomach
6	chr14:81644600-81685400	Weak transcription	Right Ventricle	heart
7	chr14:81644800-81675600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:81646000-81664800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:81646200-81674800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:81647200-81664600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:81647200-81674400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:81647400-81674600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr14:81648000-81671400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr14:81648800-81667800	Weak transcription	Fetal Heart	heart
15	chr14:81649200-81677800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:81650400-81665000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:81650600-81676600	Strong transcription	Placenta	Placenta
18	chr14:81651000-81685000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:81652600-81685400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:81653000-81662800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:81654200-81683200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:81656000-81673200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:81656200-81663600	Strong transcription	HepG2	liver
24	chr14:81656400-81664400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr14:81656600-81682800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:81656600-81683000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:81656600-81683400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:81656800-81663800	Strong transcription	Adipose Nuclei	Adipose
29	chr14:81656800-81664000	Strong transcription	Liver	Liver
30	chr14:81656800-81664200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:81657000-81664200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr14:81657000-81664200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:81657000-81664400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:81657000-81664600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:81657000-81670400	Strong transcription	Fetal Intestine Large	intestine
36	chr14:81657000-81674000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:81657200-81662800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:81657200-81662800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr14:81657200-81663000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr14:81657200-81664000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:81657200-81664200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:81657200-81664200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr14:81657200-81664200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:81657200-81664800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:81657200-81672800	Strong transcription	Fetal Lung	lung
46	chr14:81657200-81673200	Strong transcription	HSMM	muscle
47	chr14:81657600-81663000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:81658200-81662800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr14:81658200-81664400	Strong transcription	Osteobl	bone
50	chr14:81658200-81665000	Strong transcription	Primary hematopoietic stem cells	blood

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