Variant report

Variant	rs10145534
Chromosome Location	chr14:65802322-65802323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65687538..65689210-chr14:65800729..65803430,2	MCF-7	breast:
2	chr14:65801912..65803776-chr14:65819342..65822288,2	MCF-7	breast:
3	chr14:65799114..65802639-chr14:65877920..65880470,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000255002	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132229	0.94[JPT][hapmap]
rs10138151	0.82[ASN][1000 genomes]
rs10144503	0.82[ASN][1000 genomes]
rs10147958	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10150168	0.85[ASN][1000 genomes]
rs11850160	0.84[JPT][hapmap]
rs12436299	0.82[ASN][1000 genomes]
rs28557275	0.85[ASN][1000 genomes]
rs28595734	0.85[ASN][1000 genomes]
rs7143109	0.83[JPT][hapmap]
rs73278053	0.85[ASN][1000 genomes]
rs899961	0.83[JPT][hapmap]
rs9635250	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65795400-65804600	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65796000-65807200	Enhancers	Placenta	Placenta
3	chr14:65798000-65803000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:65798400-65802600	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:65798400-65803400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:65798600-65802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:65798800-65802600	Enhancers	Primary B cells from cord blood	blood
8	chr14:65798800-65803000	Enhancers	GM12878-XiMat	blood
9	chr14:65799000-65803400	Enhancers	Adipose Nuclei	Adipose
10	chr14:65799200-65803400	Enhancers	NHEK	skin
11	chr14:65799200-65805400	Enhancers	Fetal Intestine Large	intestine
12	chr14:65799400-65804200	Enhancers	Stomach Mucosa	stomach
13	chr14:65799800-65803400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr14:65800200-65803400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:65800200-65805400	Enhancers	Fetal Intestine Small	intestine
16	chr14:65800400-65803000	Enhancers	NH-A	brain
17	chr14:65800400-65803200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:65800600-65802600	Enhancers	Fetal Muscle Leg	muscle
19	chr14:65800600-65803400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65800600-65804000	Enhancers	Fetal Thymus	thymus
21	chr14:65800600-65804200	Enhancers	Primary T cells from cord blood	blood
22	chr14:65800800-65802400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr14:65800800-65802600	Enhancers	Fetal Stomach	stomach
24	chr14:65800800-65802600	Enhancers	Ovary	ovary
25	chr14:65800800-65803400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:65800800-65803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:65800800-65803400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:65800800-65803400	Enhancers	Fetal Lung	lung
29	chr14:65800800-65803400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:65800800-65803600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:65800800-65803600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr14:65801000-65802400	Enhancers	HepG2	liver
33	chr14:65801000-65803400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr14:65801000-65803600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:65801000-65803800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr14:65801000-65804000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr14:65801200-65803400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr14:65801400-65802400	Weak transcription	Gastric	stomach
39	chr14:65801400-65802400	Weak transcription	Lung	lung
40	chr14:65801400-65802400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr14:65801400-65802600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:65801400-65802600	Enhancers	Fetal Muscle Trunk	muscle
43	chr14:65801400-65803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:65801400-65803600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr14:65801400-65803600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:65801400-65803600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:65801400-65803800	Enhancers	Thymus	Thymus
48	chr14:65801600-65802400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr14:65801600-65802400	Enhancers	Colon Smooth Muscle	Colon
50	chr14:65801600-65802400	Weak transcription	Esophagus	oesophagus

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