Variant report

Variant	rs10146510
Chromosome Location	chr14:66033235-66033236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:
2	chr14:66032707..66034682-chr14:66036601..66038473,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10083327	1.00[AMR][1000 genomes]
rs10083356	1.00[AMR][1000 genomes]
rs10129221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131095	1.00[AMR][1000 genomes]
rs10131616	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132138	1.00[AMR][1000 genomes]
rs10132575	1.00[AMR][1000 genomes]
rs10134109	1.00[AMR][1000 genomes]
rs10135224	0.89[AFR][1000 genomes]
rs10136600	1.00[AMR][1000 genomes]
rs10138881	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139190	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139892	1.00[AMR][1000 genomes]
rs10140494	1.00[AMR][1000 genomes]
rs10141632	1.00[AMR][1000 genomes]
rs10142520	1.00[AMR][1000 genomes]
rs10143378	1.00[AMR][1000 genomes]
rs10143944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144478	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144701	1.00[AMR][1000 genomes]
rs10145479	1.00[AMR][1000 genomes]
rs10146253	1.00[AMR][1000 genomes]
rs10148449	1.00[AMR][1000 genomes]
rs10150033	1.00[AMR][1000 genomes]
rs10150722	1.00[AMR][1000 genomes]
rs10162357	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10162579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220481	1.00[AMR][1000 genomes]
rs17102765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152376	1.00[AMR][1000 genomes]
rs28370375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28415772	1.00[AMR][1000 genomes]
rs28452937	1.00[AMR][1000 genomes]
rs28482071	1.00[AMR][1000 genomes]
rs28489429	1.00[AMR][1000 genomes]
rs28583895	1.00[AMR][1000 genomes]
rs28612256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28682570	1.00[AMR][1000 genomes]
rs28716649	1.00[AMR][1000 genomes]
rs28789146	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28789509	1.00[AMR][1000 genomes]
rs28808288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28808905	1.00[AMR][1000 genomes]
rs28864090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28890806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57330939	1.00[AMR][1000 genomes]
rs73286155	0.80[AFR][1000 genomes]
rs73286159	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv974468	chr14:66027622-66038354	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:66016000-66041400	Weak transcription	Ovary	ovary
5	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
7	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
8	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
13	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:66023200-66040200	Weak transcription	Lung	lung
15	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
18	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
19	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
20	chr14:66026400-66033600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:66026400-66036600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:66026800-66033800	Weak transcription	Osteobl	bone
23	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
24	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:66027600-66036600	Weak transcription	Brain Anterior Caudate	brain
26	chr14:66027600-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:66027800-66041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:66028000-66034200	Strong transcription	Primary B cells from cord blood	blood
30	chr14:66028000-66039600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr14:66028600-66042400	Weak transcription	NH-A	brain
32	chr14:66028800-66039200	Weak transcription	Fetal Thymus	thymus
33	chr14:66028800-66040800	Weak transcription	Left Ventricle	heart
34	chr14:66028800-66042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:66028800-66044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:66029000-66039800	Weak transcription	Fetal Intestine Large	intestine
37	chr14:66029800-66039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:66030200-66033600	ZNF genes & repeats	GM12878-XiMat	blood
39	chr14:66030200-66040200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:66030200-66040800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr14:66032000-66037000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:66032000-66037200	Weak transcription	Primary T cells from cord blood	blood
43	chr14:66032000-66038000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr14:66032000-66041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:66032000-66042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr14:66032200-66033800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:66032200-66039200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr14:66032400-66033400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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