Variant report

Variant	rs10146537
Chromosome Location	chr14:70270231-70270232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70232655..70236319-chr14:70268193..70270379,3	MCF-7	breast:
2	chr14:70264666..70266507-chr14:70268472..70271032,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10130926	0.92[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10136397	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10136529	0.85[ASN][1000 genomes]
rs10142027	0.80[ASN][1000 genomes]
rs10142031	0.80[ASN][1000 genomes]
rs10148404	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10459536	0.82[ASN][1000 genomes]
rs11620808	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11621916	0.92[CEU][hapmap];0.97[EUR][1000 genomes]
rs11622580	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11622925	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11623262	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11624523	0.82[ASN][1000 genomes]
rs11624532	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11625731	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11625932	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11626145	0.83[EUR][1000 genomes]
rs11627012	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11627089	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11628423	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11628546	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11628665	0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12431573	0.83[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13313365	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13313366	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13313388	0.85[ASN][1000 genomes]
rs14411	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17328	0.83[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1953399	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1953400	0.81[ASN][1000 genomes]
rs2148503	0.82[ASN][1000 genomes]
rs2332167	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs28404963	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28437671	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28437822	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28480224	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2877595	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2877598	0.89[ASN][1000 genomes]
rs28785205	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28847646	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3104	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs3784153	0.84[JPT][hapmap]
rs3809399	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4646285	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646286	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4899311	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899313	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902752	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902753	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902755	0.82[ASN][1000 genomes]
rs4902756	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4902757	0.92[ASN][1000 genomes]
rs55724465	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55987626	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56074637	0.90[EUR][1000 genomes]
rs56140822	0.87[EUR][1000 genomes]
rs56177148	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57492222	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58582364	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59066042	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59172911	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60442313	0.82[ASN][1000 genomes]
rs61356864	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573905	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573906	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573909	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7153985	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7154439	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7160953	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7161476	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72725718	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72725724	0.90[EUR][1000 genomes]
rs72725740	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72725743	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72725745	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72725773	0.83[EUR][1000 genomes]
rs72725776	0.86[EUR][1000 genomes]
rs72725780	0.86[EUR][1000 genomes]
rs8005609	0.87[ASN][1000 genomes]
rs8010836	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8011311	0.85[ASN][1000 genomes]
rs8021735	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70248200-70271600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70254800-70275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:70266000-70273400	Weak transcription	HepG2	liver
4	chr14:70266600-70272800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links