Variant report

Variant	rs10148264
Chromosome Location	chr14:70080446-70080447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70078362..70080995-chr14:70181831..70184954,3	MCF-7	breast:
2	chr14:70078988..70081475-chr14:70103806..70105577,2	MCF-7	breast:
3	chr14:70078972..70081003-chr14:70168060..70169859,2	MCF-7	breast:
4	chr14:70080315..70081958-chr14:70085435..70087455,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10047848	1.00[ASW][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10131362	0.87[ASW][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137013	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10138453	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140437	0.89[ASW][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144038	1.00[EUR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs10148957	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149936	1.00[ASW][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151989	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220277	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs11626887	1.00[JPT][hapmap]
rs11847514	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1275744	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28435330	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28538272	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs28671429	1.00[EUR][1000 genomes]
rs28757382	1.00[EUR][1000 genomes]
rs28758769	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs28879830	1.00[EUR][1000 genomes]
rs3809396	1.00[CEU][hapmap]
rs9805962	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70077600-70081000	Active TSS	Esophagus	oesophagus
2	chr14:70078000-70081000	Active TSS	GM12878-XiMat	blood
3	chr14:70078800-70080800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr14:70078800-70080800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:70079000-70080600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:70079000-70080600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr14:70079000-70080600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr14:70079000-70080600	Flanking Active TSS	Hela-S3	cervix
9	chr14:70079000-70080800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:70079000-70080800	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr14:70079000-70082800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr14:70079000-70083200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr14:70079200-70080600	Flanking Active TSS	Primary B cells from peripheral blood	blood
14	chr14:70079200-70080600	Flanking Active TSS	Liver	Liver
15	chr14:70079200-70080600	Flanking Active TSS	Brain Angular Gyrus	brain
16	chr14:70079200-70080600	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr14:70079200-70080600	Flanking Active TSS	Osteobl	bone
18	chr14:70079200-70080800	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr14:70079200-70080800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr14:70079200-70080800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:70079200-70080800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:70079200-70081000	Flanking Active TSS	Fetal Thymus	thymus
23	chr14:70079200-70083200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr14:70079200-70083400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr14:70079400-70080600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:70079400-70080600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:70079400-70080600	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr14:70079400-70080600	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr14:70079400-70080600	Flanking Active TSS	NH-A	brain
30	chr14:70079400-70080800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:70079400-70080800	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr14:70079400-70081000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr14:70079400-70083800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr14:70079600-70080600	Flanking Active TSS	Fetal Lung	lung
35	chr14:70079600-70080800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:70079600-70080800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr14:70079600-70080800	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr14:70079600-70082200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:70079600-70082400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:70079600-70085600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:70079600-70095800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:70079800-70080600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:70079800-70080600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:70079800-70080600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:70079800-70080600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:70079800-70080600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr14:70079800-70080600	Enhancers	Fetal Kidney	kidney
48	chr14:70079800-70080600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr14:70079800-70080600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr14:70079800-70080800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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