Variant report

Variant	rs10148995
Chromosome Location	chr14:55380779-55380780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10131563	1.00[AMR][1000 genomes]
rs10138594	1.00[AMR][1000 genomes]
rs10139408	0.87[AFR][1000 genomes]
rs10140092	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141456	1.00[AMR][1000 genomes]
rs10142436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145816	0.86[AFR][1000 genomes]
rs11847085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12323345	1.00[AMR][1000 genomes]
rs28411355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413055	1.00[AMR][1000 genomes]
rs28458175	0.82[AFR][1000 genomes]
rs9972204	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370600-55388600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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