Variant report

Variant	rs10149038
Chromosome Location	chr14:55597105-55597106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55368311..55371330-chr14:55594542..55598408,4	MCF-7	breast:
2	chr14:55516981..55523073-chr14:55594365..55600344,10	MCF-7	breast:
3	chr14:55595591..55597639-chr14:69257922..69259895,2	MCF-7	breast:
4	chr14:55587248..55591020-chr14:55595215..55599629,4	K562	blood:
5	chr14:55517037..55520851-chr14:55594266..55601656,13	MCF-7	breast:
6	chr14:55520859..55523802-chr14:55596862..55599089,2	MCF-7	breast:
7	chr14:55596607..55598705-chr14:55613153..55615282,2	MCF-7	breast:
8	chr14:55589520..55592355-chr14:55596993..55599725,2	K562	blood:
9	chr14:55594568..55597255-chr20:45984392..45987223,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000168175	Chromatin interaction
ENSG00000131979	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10132251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138287	0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140700	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142150	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146432	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148371	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151981	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438128	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13379284	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128204	1.00[EUR][1000 genomes]
rs17128286	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128411	1.00[TSI][hapmap]
rs28415601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584735	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34630492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56313126	1.00[EUR][1000 genomes]
rs60302297	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60342915	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010658	1.00[MEX][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55593200-55597800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr14:55595200-55598400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:55595400-55597200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr14:55595400-55597200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr14:55595400-55597400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr14:55595400-55597400	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr14:55595400-55597600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:55595400-55597600	Active TSS	NHDF-Ad	bronchial
9	chr14:55595400-55597800	Active TSS	Muscle Satellite Cultured Cells	--
10	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:55595600-55597200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr14:55595600-55597200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr14:55595600-55597200	Active TSS	Aorta	Aorta
14	chr14:55595600-55597200	Active TSS	Brain Angular Gyrus	brain
15	chr14:55595600-55597200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:55595600-55597200	Active TSS	Brain Substantia Nigra	brain
17	chr14:55595600-55597200	Active TSS	Gastric	stomach
18	chr14:55595600-55597400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:55595600-55597400	Active TSS	Brain Hippocampus Middle	brain
20	chr14:55595600-55597400	Active TSS	Pancreas	Pancrea
21	chr14:55595600-55597600	Active TSS	Stomach Mucosa	stomach
22	chr14:55595600-55597800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:55595600-55597800	Active TSS	Placenta Amnion	Placenta Amnion
24	chr14:55595600-55597800	Active TSS	Rectal Smooth Muscle	rectum
25	chr14:55595600-55597800	Active TSS	Right Atrium	heart
26	chr14:55595600-55598000	Active TSS	Lung	lung
27	chr14:55595600-55598000	Active TSS	HSMMtube	muscle
28	chr14:55595600-55598200	Active TSS	Left Ventricle	heart
29	chr14:55595600-55598200	Active TSS	Ovary	ovary
30	chr14:55595600-55598200	Active TSS	Small Intestine	intestine
31	chr14:55595600-55598400	Active TSS	Right Ventricle	heart
32	chr14:55595600-55598600	Active TSS	Esophagus	oesophagus
33	chr14:55595600-55598600	Active TSS	Psoas Muscle	Psoas
34	chr14:55595600-55599000	Active TSS	Colonic Mucosa	Colon
35	chr14:55595800-55597200	Active TSS	HMEC	breast
36	chr14:55595800-55597400	Active TSS	HSMM	muscle
37	chr14:55595800-55597600	Active TSS	Hela-S3	cervix
38	chr14:55595800-55597600	Active TSS	NHEK	skin
39	chr14:55595800-55597800	Active TSS	NHLF	lung
40	chr14:55596000-55597200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:55596000-55597200	Flanking Active TSS	Liver	Liver
42	chr14:55596200-55597200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
43	chr14:55596200-55597200	Bivalent/Poised TSS	Fetal Kidney	kidney
44	chr14:55596200-55597200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr14:55596200-55597200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr14:55596200-55597200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr14:55596200-55599000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:55596200-55603200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
49	chr14:55596400-55597200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr14:55596400-55597200	Flanking Active TSS	HUVEC	blood vessel

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