Variant report

Variant	rs10150925
Chromosome Location	chr14:70418999-70419000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10129698	1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10144834	0.92[AFR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs12164873	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1275845	1.00[EUR][1000 genomes]
rs17558644	1.00[YRI][hapmap]
rs1952203	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28505725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs7154537	1.00[EUR][1000 genomes]
rs9944026	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70414800-70437400	Strong transcription	Hela-S3	cervix
2	chr14:70415400-70434400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:70415600-70419600	Weak transcription	HepG2	liver
4	chr14:70415800-70420000	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:70415800-70444600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:70416000-70422600	Weak transcription	Brain Substantia Nigra	brain
7	chr14:70416200-70421800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:70416800-70419000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:70417000-70420000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:70417800-70422000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:70417800-70424000	Enhancers	Fetal Brain Male	brain
12	chr14:70418200-70421800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:70418400-70419000	Enhancers	Liver	Liver
14	chr14:70418400-70420000	Enhancers	Fetal Brain Female	brain
15	chr14:70418400-70423600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:70418600-70420000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:70418600-70420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:70418600-70422600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:70418800-70419200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:70418800-70419200	ZNF genes & repeats	Spleen	Spleen
21	chr14:70418800-70419600	Enhancers	Brain Anterior Caudate	brain
22	chr14:70418800-70420000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:70418800-70421200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:70418800-70421400	Enhancers	Brain Germinal Matrix	brain
25	chr14:70418800-70421600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:70418800-70422000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:70418800-70448600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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