Variant report

Variant	rs10151094
Chromosome Location	chr14:65698561-65698562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
2	chr14:65696604..65698657-chr14:65706204..65708336,3	K562	blood:
3	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
4	chr14:65693679..65698667-chr14:65701405..65705460,7	MCF-7	breast:
5	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10130924	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10131327	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10143368	0.84[CEU][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs12147348	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12147965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573593	0.83[CEU][hapmap]
rs7160062	0.87[JPT][hapmap]
rs8021641	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10151094	PLEK2	cis	cerebellum	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65691800-65698600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:65693400-65704200	Weak transcription	Gastric	stomach
3	chr14:65695400-65698800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:65695400-65699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65696600-65698800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:65696800-65703600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:65697000-65698800	Enhancers	Placenta	Placenta
8	chr14:65697200-65698800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:65697200-65698800	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:65697200-65698800	Enhancers	Fetal Lung	lung
11	chr14:65697200-65698800	Enhancers	GM12878-XiMat	blood
12	chr14:65697200-65698800	Enhancers	HMEC	breast
13	chr14:65697200-65699000	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:65697200-65699200	Enhancers	Fetal Intestine Large	intestine
15	chr14:65697200-65699200	Enhancers	Fetal Intestine Small	intestine
16	chr14:65697200-65699200	Enhancers	Stomach Mucosa	stomach
17	chr14:65697200-65703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:65697200-65703200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:65697200-65703600	Weak transcription	HSMMtube	muscle
20	chr14:65697200-65704800	Weak transcription	Lung	lung
21	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:65697400-65698600	Enhancers	Primary T cells from cord blood	blood
23	chr14:65697400-65698600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:65697400-65698600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr14:65697400-65698600	Enhancers	Hela-S3	cervix
26	chr14:65697400-65698800	Enhancers	Primary B cells from cord blood	blood
27	chr14:65697400-65698800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:65697400-65698800	Enhancers	Brain Germinal Matrix	brain
29	chr14:65697400-65698800	Enhancers	Duodenum Mucosa	Duodenum
30	chr14:65697400-65698800	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:65697400-65699200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr14:65697400-65699200	Enhancers	Brain Anterior Caudate	brain
33	chr14:65697400-65699200	Enhancers	Brain Hippocampus Middle	brain
34	chr14:65697400-65703400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:65697400-65703400	Weak transcription	NHEK	skin
36	chr14:65697400-65703600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:65697400-65703600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:65697400-65704200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:65697400-65704400	Weak transcription	Colonic Mucosa	Colon
40	chr14:65697400-65704600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:65697400-65706000	Weak transcription	Spleen	Spleen
42	chr14:65697400-65710600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:65697600-65703200	Weak transcription	NHLF	lung
44	chr14:65697600-65704600	Weak transcription	K562	blood
45	chr14:65697800-65698800	Enhancers	Brain Substantia Nigra	brain
46	chr14:65697800-65703200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:65697800-65703200	Weak transcription	Osteobl	bone
48	chr14:65698000-65698600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr14:65698000-65698600	Enhancers	A549	lung
50	chr14:65698000-65698600	Enhancers	NH-A	brain

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