Variant report

Variant	rs10151445
Chromosome Location	chr14:35423012-35423013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10130702	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10130877	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10130911	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10132452	0.98[ASN][1000 genomes]
rs10133628	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10135024	0.95[ASN][1000 genomes]
rs10135457	0.94[ASN][1000 genomes]
rs10135654	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143040	0.95[ASN][1000 genomes]
rs10143749	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145490	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10147046	0.94[ASN][1000 genomes]
rs10148463	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149083	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151096	0.98[ASN][1000 genomes]
rs1028447	0.97[ASN][1000 genomes]
rs12050394	0.82[ASN][1000 genomes]
rs12433712	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434719	0.98[ASN][1000 genomes]
rs12437158	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12586945	0.98[ASN][1000 genomes]
rs12589238	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590905	0.95[ASN][1000 genomes]
rs12878315	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12878685	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12878970	0.93[ASN][1000 genomes]
rs12881501	0.84[ASN][1000 genomes]
rs12882728	0.97[ASN][1000 genomes]
rs12886340	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12887073	0.95[ASN][1000 genomes]
rs12887279	0.94[ASN][1000 genomes]
rs12891283	0.98[ASN][1000 genomes]
rs12891473	0.98[ASN][1000 genomes]
rs17102982	0.95[ASN][1000 genomes]
rs1955437	0.93[ASN][1000 genomes]
rs2250579	0.95[ASN][1000 genomes]
rs2273155	0.89[ASN][1000 genomes]
rs2383691	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2383692	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2383694	0.94[ASN][1000 genomes]
rs28373866	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28479817	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28627922	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28656938	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34793309	0.93[ASN][1000 genomes]
rs35523754	0.90[ASN][1000 genomes]
rs35768136	0.88[ASN][1000 genomes]
rs3759549	0.98[ASN][1000 genomes]
rs4386037	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4981256	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981257	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4982231	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4982232	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55670220	0.95[ASN][1000 genomes]
rs57787567	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6571691	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7144898	0.95[ASN][1000 genomes]
rs7147346	0.94[ASN][1000 genomes]
rs7154181	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158547	0.93[ASN][1000 genomes]
rs7159696	0.95[ASN][1000 genomes]
rs72474105	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8004237	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8005641	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8006578	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8006908	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8009854	0.98[ASN][1000 genomes]
rs8012308	0.95[ASN][1000 genomes]
rs8015059	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015200	0.95[ASN][1000 genomes]
rs8017611	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8018702	0.97[ASN][1000 genomes]
rs8018761	0.97[ASN][1000 genomes]
rs8020050	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021502	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322942	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv901603	chr14:35371697-35435651	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
9	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
11	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	esv1802718	chr14:35400075-35429777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv1035925	chr14:35404661-35483420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35394600-35424000	Weak transcription	Fetal Lung	lung
2	chr14:35396400-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:35396600-35424800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:35400600-35427000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:35401000-35428800	Weak transcription	GM12878-XiMat	blood
6	chr14:35401000-35440400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:35401400-35428800	Weak transcription	Stomach Mucosa	stomach
8	chr14:35403000-35423800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:35403200-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:35403600-35425200	Weak transcription	Gastric	stomach
11	chr14:35407000-35425000	Weak transcription	Spleen	Spleen
12	chr14:35408200-35425400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:35410000-35425200	Weak transcription	Right Ventricle	heart
14	chr14:35411000-35434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:35411800-35450000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:35413000-35425200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:35413200-35423400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr14:35413200-35423400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:35413200-35435200	Weak transcription	A549	lung
20	chr14:35413400-35449600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:35413600-35435000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:35414000-35425000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:35414000-35435200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:35414200-35425000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:35414400-35425200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:35414400-35425200	Weak transcription	Aorta	Aorta
27	chr14:35414400-35425200	Weak transcription	Lung	lung
28	chr14:35414400-35425200	Weak transcription	Ovary	ovary
29	chr14:35414600-35423200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:35417400-35423200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr14:35417400-35449400	Weak transcription	Dnd41	blood
32	chr14:35417600-35424000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:35417600-35433600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr14:35417800-35423800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:35417800-35436800	Weak transcription	Osteobl	bone
36	chr14:35417800-35438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:35417800-35439200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:35418000-35424000	Weak transcription	Hela-S3	cervix
39	chr14:35418000-35450600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:35418200-35446000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:35418400-35429600	Strong transcription	HepG2	liver
42	chr14:35418800-35449600	Weak transcription	Placenta	Placenta
43	chr14:35419000-35424200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:35419000-35430000	Strong transcription	Liver	Liver
45	chr14:35419000-35445000	Weak transcription	Pancreas	Pancrea
46	chr14:35419200-35425200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:35419200-35427400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:35419200-35430800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:35419400-35423200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:35419400-35435000	Weak transcription	H1 Cell Line	embryonic stem cell

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