Variant report

Variant	rs10151549
Chromosome Location	chr14:70206840-70206841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10134553	1.00[EUR][1000 genomes]
rs17107278	1.00[EUR][1000 genomes]
rs2332166	1.00[EUR][1000 genomes]
rs28607349	1.00[EUR][1000 genomes]
rs57714406	0.83[AMR][1000 genomes]
rs8014019	1.00[EUR][1000 genomes]
rs9323529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70198400-70207400	Weak transcription	Liver	Liver
2	chr14:70200200-70207200	Weak transcription	HepG2	liver
3	chr14:70205400-70207200	Enhancers	Placenta	Placenta
4	chr14:70206000-70207000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:70206000-70208600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:70206400-70207000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:70206400-70207000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr14:70206400-70208200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:70206400-70208200	Enhancers	HMEC	breast
10	chr14:70206600-70207400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:70206800-70207200	Weak transcription	NHEK	skin
12	chr14:70206800-70207600	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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