Variant report

Variant	rs10152058
Chromosome Location	chr14:37344321-37344322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10136142	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139375	1.00[AMR][1000 genomes]
rs10139658	1.00[AMR][1000 genomes]
rs10143006	1.00[AMR][1000 genomes]
rs10145879	1.00[AMR][1000 genomes]
rs10147344	1.00[AMR][1000 genomes]
rs10147578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150081	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28429787	1.00[AMR][1000 genomes]
rs28576870	1.00[AMR][1000 genomes]
rs28659794	1.00[AMR][1000 genomes]
rs60763979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155771	1.00[AMR][1000 genomes]
rs74045204	1.00[AMR][1000 genomes]
rs74045464	1.00[AMR][1000 genomes]
rs74047035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74047036	0.81[AFR][1000 genomes]
rs8018385	1.00[AMR][1000 genomes]
rs9322972	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37337800-37345400	Weak transcription	Gastric	stomach
2	chr14:37340600-37348800	Weak transcription	K562	blood
3	chr14:37342800-37344600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:37343200-37344600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:37343200-37344600	Enhancers	HMEC	breast
6	chr14:37343400-37344400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:37344200-37344600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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