Variant report

Variant	rs10152189
Chromosome Location	chr15:34591531-34591532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34590151..34592277-chr15:34605995..34607909,2	K562	blood:

Variant related genes	Relation type
ENSG00000207091	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10152222	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10152351	0.94[AFR][1000 genomes]
rs10152407	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10162625	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10467958	0.96[AFR][1000 genomes]
rs10467959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10468070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324422	0.94[AFR][1000 genomes]
rs12324469	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13379654	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13380356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13380366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958911	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16958950	0.98[AFR][1000 genomes]
rs2615359	1.00[EUR][1000 genomes]
rs2705349	1.00[EUR][1000 genomes]
rs2705350	1.00[EUR][1000 genomes]
rs28442188	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28543997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28608058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28664278	0.86[AFR][1000 genomes]
rs28762482	0.98[AFR][1000 genomes]
rs28807170	0.98[AFR][1000 genomes]
rs28857572	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28871951	0.98[AFR][1000 genomes]
rs347815	1.00[EUR][1000 genomes]
rs56964418	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57044113	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57573060	0.94[AFR][1000 genomes]
rs58198195	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59662878	0.90[AFR][1000 genomes]
rs60708162	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61659679	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495651	0.98[AFR][1000 genomes]
rs6495652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495653	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495656	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495657	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6495658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495659	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165738	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7165973	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7166559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167363	0.94[AFR][1000 genomes]
rs7167379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168029	0.94[AFR][1000 genomes]
rs7168168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168361	0.98[AFR][1000 genomes]
rs7168606	0.94[AFR][1000 genomes]
rs7168707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169731	0.83[AFR][1000 genomes]
rs7169802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183736	0.94[AFR][1000 genomes]
rs8023999	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8024424	0.94[AFR][1000 genomes]
rs8024443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030737	0.94[AFR][1000 genomes]
rs8032579	0.98[AFR][1000 genomes]
rs8033545	0.92[AFR][1000 genomes]
rs8035044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035650	0.83[AFR][1000 genomes]
rs8036094	0.88[AFR][1000 genomes]
rs8038493	0.94[AFR][1000 genomes]
rs8039233	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8039356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806767	0.94[AFR][1000 genomes]
rs9806778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9989297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
16	nsv1051403	chr15:34573065-34600474	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv819906	chr15:34585431-34597560	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34548200-34592600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:34551200-34608800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:34555200-34606600	Weak transcription	Thymus	Thymus
4	chr15:34577600-34608800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:34577600-34610200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:34577800-34593200	Weak transcription	HepG2	liver
7	chr15:34577800-34608800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:34578200-34606800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:34579000-34603800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:34582200-34599000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:34582600-34609600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:34582600-34610200	Weak transcription	Fetal Lung	lung
13	chr15:34583400-34609600	Weak transcription	Adipose Nuclei	Adipose
14	chr15:34583600-34593600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:34583800-34610600	Weak transcription	Pancreas	Pancrea
16	chr15:34585000-34609600	Weak transcription	Spleen	Spleen
17	chr15:34585000-34610600	Weak transcription	Lung	lung
18	chr15:34585200-34596400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:34585200-34598600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:34585200-34609600	Weak transcription	Fetal Stomach	stomach
21	chr15:34585200-34615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:34585400-34602200	Weak transcription	Esophagus	oesophagus
23	chr15:34585400-34608600	Weak transcription	Liver	Liver
24	chr15:34585800-34604600	Weak transcription	Fetal Intestine Large	intestine
25	chr15:34585800-34610400	Weak transcription	Ovary	ovary
26	chr15:34586400-34592800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:34586600-34609800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:34587000-34610200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:34587400-34592000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr15:34587800-34591600	Weak transcription	Primary B cells from cord blood	blood
31	chr15:34587800-34593600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr15:34587800-34604400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr15:34588400-34591800	Enhancers	Fetal Heart	heart
34	chr15:34588800-34592000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:34589200-34591600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:34589800-34593600	Weak transcription	Stomach Mucosa	stomach
37	chr15:34589800-34597200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:34589800-34600400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:34589800-34610600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:34590000-34598400	Weak transcription	Left Ventricle	heart
41	chr15:34590000-34609000	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:34590000-34610400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:34590000-34610600	Weak transcription	Small Intestine	intestine
44	chr15:34590200-34592800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:34590200-34603800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr15:34590400-34593800	Weak transcription	Gastric	stomach
47	chr15:34590400-34596800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:34590400-34599600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:34590400-34604200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:34590800-34592600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links