Variant report

Variant	rs10153599
Chromosome Location	chr2:148979148-148979149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10168750	0.89[AMR][1000 genomes]
rs10168759	0.89[AMR][1000 genomes]
rs10177233	0.89[AMR][1000 genomes]
rs10188956	0.89[AMR][1000 genomes]
rs10208949	0.89[AMR][1000 genomes]
rs10928387	0.89[AMR][1000 genomes]
rs10928392	0.89[AMR][1000 genomes]
rs11692197	0.89[AMR][1000 genomes]
rs12472437	0.89[AMR][1000 genomes]
rs12691783	0.89[AMR][1000 genomes]
rs1377455	0.89[AMR][1000 genomes]
rs1470862	0.89[AMR][1000 genomes]
rs1542323	0.89[AMR][1000 genomes]
rs1869342	0.89[AMR][1000 genomes]
rs1992989	0.89[AMR][1000 genomes]
rs2034672	0.89[AMR][1000 genomes]
rs2123617	0.89[AMR][1000 genomes]
rs2167882	0.89[AMR][1000 genomes]
rs2219066	0.89[AMR][1000 genomes]
rs2656318	0.89[AMR][1000 genomes]
rs4972339	0.89[AMR][1000 genomes]
rs4972340	0.89[AMR][1000 genomes]
rs4972344	0.89[AMR][1000 genomes]
rs4972350	0.89[AMR][1000 genomes]
rs4972351	0.89[AMR][1000 genomes]
rs4972352	0.89[AMR][1000 genomes]
rs4972353	0.89[AMR][1000 genomes]
rs55721902	0.89[AMR][1000 genomes]
rs6430307	0.89[AMR][1000 genomes]
rs6709521	0.89[AMR][1000 genomes]
rs6722460	0.89[AMR][1000 genomes]
rs6725093	0.89[AMR][1000 genomes]
rs6726373	0.89[AMR][1000 genomes]
rs7424220	0.89[AMR][1000 genomes]
rs7569947	0.89[AMR][1000 genomes]
rs7572485	0.89[AMR][1000 genomes]
rs7573171	0.89[AMR][1000 genomes]
rs7588000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7602337	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001339	chr2:148755022-149020866	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535977	chr2:148755022-149020866	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv869146	chr2:148787051-149060763	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv875276	chr2:148844369-148996824	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004431	chr2:148859099-149054114	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv997674	chr2:148862630-148995570	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1007998	chr2:148866051-148995570	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1009608	chr2:148897348-149133718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148928600-148993600	Weak transcription	HSMM	muscle
2	chr2:148931200-148993200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:148944000-148987400	Weak transcription	Ovary	ovary
4	chr2:148959200-148987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:148959400-148987000	Weak transcription	Primary B cells from cord blood	blood
6	chr2:148959400-148993400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr2:148959600-148986800	Weak transcription	Primary T cells from cord blood	blood
8	chr2:148966000-148994400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:148971800-148979600	Weak transcription	Fetal Brain Male	brain
10	chr2:148972400-148993000	Weak transcription	NHDF-Ad	bronchial
11	chr2:148975200-148979400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:148977000-148992000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:148978400-148979200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:148978600-148979200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:148979000-148980200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr2:148979000-148988400	Weak transcription	Left Ventricle	heart

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