Variant report

Variant	rs10154847
Chromosome Location	chr3:23198829-23198830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11916059	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11926494	0.80[EUR][1000 genomes]
rs11927173	0.81[EUR][1000 genomes]
rs13314285	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1908475	0.80[EUR][1000 genomes]
rs4078178	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56223303	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58724157	0.81[EUR][1000 genomes]
rs6765801	0.81[EUR][1000 genomes]
rs6780569	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9812056	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9831921	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9847818	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23198400-23199400	Enhancers	Fetal Lung	lung
2	chr3:23198400-23199400	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:23198600-23199000	Enhancers	Colon Smooth Muscle	Colon
4	chr3:23198600-23199200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:23198600-23199400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:23198600-23199600	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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