Variant report

Variant	rs10156529
Chromosome Location	chr9:15206239-15206240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15206033..15209018-chr9:15421767..15424540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10120405	1.00[AMR][1000 genomes]
rs10122160	1.00[AMR][1000 genomes]
rs10217556	1.00[AMR][1000 genomes]
rs12347250	1.00[AMR][1000 genomes]
rs12348497	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:15159000-15211200	Weak transcription	HMEC	breast
3	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:15166200-15211200	Weak transcription	NH-A	brain
5	chr9:15168200-15206800	Weak transcription	NHEK	skin
6	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
7	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
8	chr9:15177000-15213000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:15179400-15221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:15181000-15211800	Weak transcription	NHLF	lung
11	chr9:15182000-15211400	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:15182200-15211400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:15182200-15229200	Weak transcription	Gastric	stomach
14	chr9:15185600-15225800	Weak transcription	Pancreas	Pancrea
15	chr9:15188400-15211400	Weak transcription	Fetal Kidney	kidney
16	chr9:15190000-15207000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:15191800-15211200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:15192400-15223200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:15192600-15211000	Weak transcription	NHDF-Ad	bronchial
21	chr9:15192600-15211200	Weak transcription	Adipose Nuclei	Adipose
22	chr9:15192600-15211400	Weak transcription	Brain Anterior Caudate	brain
23	chr9:15192600-15213000	Weak transcription	Small Intestine	intestine
24	chr9:15193200-15207400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:15193200-15212200	Weak transcription	Aorta	Aorta
26	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
27	chr9:15196000-15214200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:15196600-15211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:15196800-15211400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:15197000-15211000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:15197000-15213000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr9:15197200-15211400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:15197200-15223000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:15197200-15225000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr9:15197400-15206800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:15197400-15209800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:15199000-15206400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr9:15200200-15211200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:15200600-15207200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:15202000-15211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:15202000-15217400	Weak transcription	Esophagus	oesophagus
42	chr9:15202600-15210800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:15202800-15206400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:15203200-15208400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr9:15203400-15211400	Strong transcription	Primary T cells from cord blood	blood
46	chr9:15203800-15206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:15204000-15209600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:15204000-15210600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:15204200-15207200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:15204200-15208600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links