Variant report

Variant	rs10157295
Chromosome Location	chr1:194037627-194037628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:194034954..194036751-chr1:194037029..194038550,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10429908	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10733081	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10921484	0.83[ASN][1000 genomes]
rs10921488	0.93[ASN][1000 genomes]
rs10921489	0.98[ASN][1000 genomes]
rs10921490	0.89[ASN][1000 genomes]
rs10921492	0.91[ASN][1000 genomes]
rs12028846	0.94[ASN][1000 genomes]
rs12073039	0.94[ASN][1000 genomes]
rs12750617	0.84[ASN][1000 genomes]
rs12755187	0.96[ASN][1000 genomes]
rs1323088	0.90[ASN][1000 genomes]
rs1323089	0.90[ASN][1000 genomes]
rs13374626	0.96[ASN][1000 genomes]
rs1442421	0.93[EUR][1000 genomes]
rs1442422	0.88[ASN][1000 genomes]
rs2584257	0.80[EUR][1000 genomes]
rs2895663	0.82[EUR][1000 genomes]
rs34143337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4657898	0.87[ASN][1000 genomes]
rs4657899	0.87[ASN][1000 genomes]
rs4657901	0.92[ASN][1000 genomes]
rs511374	0.82[EUR][1000 genomes]
rs624023	0.82[EUR][1000 genomes]
rs627525	0.82[EUR][1000 genomes]
rs634899	0.82[EUR][1000 genomes]
rs637225	0.82[EUR][1000 genomes]
rs651794	0.82[EUR][1000 genomes]
rs665903	0.82[EUR][1000 genomes]
rs6672135	0.95[EUR][1000 genomes]
rs7521863	0.86[ASN][1000 genomes]
rs9943099	0.95[EUR][1000 genomes]
rs9943193	0.80[EUR][1000 genomes]
rs9943194	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv467016	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv548665	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv872836	chr1:194032486-194130204	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194032200-194043000	Weak transcription	Right Atrium	heart
2	chr1:194033800-194040400	Weak transcription	HUVEC	blood vessel
3	chr1:194037000-194038800	Enhancers	Ovary	ovary
4	chr1:194037200-194037800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:194037200-194039600	Enhancers	Fetal Heart	heart
6	chr1:194037400-194038600	Weak transcription	Left Ventricle	heart
7	chr1:194037600-194038600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:194037600-194038600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:194037600-194038800	Enhancers	Adipose Nuclei	Adipose

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