Variant report
| Variant | rs10157860 |
|---|---|
| Chromosome Location | chr1:152297494-152297495 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs11805976 | 1.00[EUR][1000 genomes] |
| rs11807452 | 1.00[EUR][1000 genomes] |
| rs11807465 | 1.00[EUR][1000 genomes] |
| rs11810565 | 1.00[EUR][1000 genomes] |
| rs12062763 | 1.00[EUR][1000 genomes] |
| rs12068970 | 1.00[EUR][1000 genomes] |
| rs12071768 | 1.00[EUR][1000 genomes] |
| rs12076464 | 1.00[EUR][1000 genomes] |
| rs13374059 | 0.85[AMR][1000 genomes] |
| rs16833974 | 1.00[EUR][1000 genomes] |
| rs3120668 | 1.00[EUR][1000 genomes] |
| rs3120669 | 1.00[EUR][1000 genomes] |
| rs477291 | 1.00[EUR][1000 genomes] |
| rs506407 | 1.00[EUR][1000 genomes] |
| rs58782040 | 1.00[EUR][1000 genomes] |
| rs60958057 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61250742 | 1.00[EUR][1000 genomes] |
| rs61676926 | 1.00[EUR][1000 genomes] |
| rs61749580 | 1.00[EUR][1000 genomes] |
| rs6587670 | 1.00[EUR][1000 genomes] |
| rs6667236 | 1.00[EUR][1000 genomes] |
| rs6669029 | 1.00[EUR][1000 genomes] |
| rs6673073 | 1.00[EUR][1000 genomes] |
| rs6681629 | 1.00[EUR][1000 genomes] |
| rs6695830 | 1.00[EUR][1000 genomes] |
| rs72997398 | 1.00[EUR][1000 genomes] |
| rs72999303 | 1.00[EUR][1000 genomes] |
| rs73001316 | 1.00[EUR][1000 genomes] |
| rs73001318 | 1.00[EUR][1000 genomes] |
| rs73001319 | 1.00[EUR][1000 genomes] |
| rs73001326 | 1.00[EUR][1000 genomes] |
| rs73001329 | 1.00[EUR][1000 genomes] |
| rs73001338 | 1.00[EUR][1000 genomes] |
| rs73007787 | 1.00[EUR][1000 genomes] |
| rs73007794 | 1.00[EUR][1000 genomes] |
| rs73007801 | 1.00[EUR][1000 genomes] |
| rs7514641 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7549175 | 1.00[EUR][1000 genomes] |
| rs7554863 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9725444 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9970231 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005472 | chr1:152247763-152443448 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv535161 | chr1:152247763-152443448 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | nsv471348 | chr1:152274651-152297679 | Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription | TF binding regionCpG islandlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv998298 | chr1:152288685-152319877 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:152286600-152322200 | Weak transcription | Ovary | ovary |
| 2 | chr1:152291800-152297800 | Active TSS | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 3 | chr1:152297200-152297600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 4 | chr1:152297200-152297800 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
