Variant report

Variant	rs10157869
Chromosome Location	chr1:93430174-93430175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93418758..93421387-chr1:93428230..93431121,2	MCF-7	breast:
2	chr1:93428670..93431519-chr1:93436663..93439033,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10159030	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1114004	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13373836	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs13374961	1.00[JPT][hapmap]
rs13374962	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17131669	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17131670	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17131671	1.00[EUR][1000 genomes]
rs17131672	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17131673	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17131674	1.00[JPT][hapmap]
rs17131676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131677	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394666	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs59078677	1.00[EUR][1000 genomes]
rs60165854	1.00[EUR][1000 genomes]
rs61318253	1.00[EUR][1000 genomes]
rs6673190	1.00[EUR][1000 genomes]
rs7515224	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7519363	1.00[JPT][hapmap]
rs7539571	1.00[JPT][hapmap]
rs7552766	1.00[JPT][hapmap]
rs9324344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324345	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93427800-93433800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:93428000-93430200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:93428000-93431600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:93428000-93431800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:93428000-93432200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:93428000-93434200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:93428200-93430200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:93428200-93431400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:93428200-93431400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:93428200-93431600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:93428200-93432000	Enhancers	Fetal Thymus	thymus
12	chr1:93428200-93432200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:93428200-93432200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:93428200-93433600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:93428200-93433600	Weak transcription	Hela-S3	cervix
16	chr1:93428200-93438400	Weak transcription	Brain Angular Gyrus	brain
17	chr1:93428400-93430200	Weak transcription	Small Intestine	intestine
18	chr1:93428400-93430800	Enhancers	Dnd41	blood
19	chr1:93428400-93431000	Enhancers	Primary B cells from cord blood	blood
20	chr1:93428400-93433600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:93428400-93433600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:93428400-93433600	Weak transcription	Brain Anterior Caudate	brain
23	chr1:93428400-93433600	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:93428400-93433600	Weak transcription	Fetal Heart	heart
25	chr1:93428400-93435000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:93428400-93438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:93428400-93445800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:93428600-93430200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr1:93428600-93431600	Enhancers	Thymus	Thymus
30	chr1:93428600-93436800	Weak transcription	NHEK	skin
31	chr1:93429000-93432200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr1:93429200-93430200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:93429200-93431200	Weak transcription	K562	blood
34	chr1:93429200-93432200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr1:93429200-93438200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:93429400-93431200	Bivalent Enhancer	HepG2	liver
37	chr1:93429400-93433600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:93429600-93431600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:93429800-93430200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:93429800-93430600	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr1:93430000-93431000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:93430000-93433400	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links