Variant report
| Variant | rs10158764 |
|---|---|
| Chromosome Location | chr1:220899054-220899055 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10495148 | 1.00[AMR][1000 genomes] |
| rs11799728 | 1.00[AMR][1000 genomes] |
| rs11800654 | 1.00[AMR][1000 genomes] |
| rs11801239 | 1.00[AMR][1000 genomes] |
| rs11802247 | 1.00[AMR][1000 genomes] |
| rs11802248 | 1.00[AMR][1000 genomes] |
| rs11806648 | 1.00[AMR][1000 genomes] |
| rs11806710 | 1.00[AMR][1000 genomes] |
| rs11807413 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11808530 | 1.00[AMR][1000 genomes] |
| rs11811042 | 1.00[AMR][1000 genomes] |
| rs11811445 | 1.00[AMR][1000 genomes] |
| rs11811872 | 1.00[AMR][1000 genomes] |
| rs17007924 | 1.00[AMR][1000 genomes] |
| rs17008033 | 1.00[AMR][1000 genomes] |
| rs17008084 | 1.00[AMR][1000 genomes] |
| rs17008159 | 1.00[AMR][1000 genomes] |
| rs17008391 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3849285 | 1.00[AMR][1000 genomes] |
| rs3897868 | 1.00[AMR][1000 genomes] |
| rs3897869 | 1.00[AMR][1000 genomes] |
| rs61195656 | 1.00[AMR][1000 genomes] |
| rs6665732 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6670387 | 1.00[AMR][1000 genomes] |
| rs6696558 | 1.00[AMR][1000 genomes] |
| rs6704108 | 1.00[AMR][1000 genomes] |
| rs7512854 | 1.00[AMR][1000 genomes] |
| rs7519187 | 1.00[AMR][1000 genomes] |
| rs7523054 | 1.00[AMR][1000 genomes] |
| rs7524156 | 1.00[AMR][1000 genomes] |
| rs7530121 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754270 | chr1:220850116-220929155 | Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:220895600-220900800 | Weak transcription | Liver | Liver |
