Variant report

Variant	rs10160313
Chromosome Location	chr11:47554057-47554058
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47543706..47547000-chr11:47553093..47555540,3	K562	blood:
2	chr11:47553390..47555536-chr11:47600207..47602219,2	K562	blood:
3	chr11:47553494..47556204-chr11:47558570..47560706,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction
ENSG00000123444	Chromatin interaction
ENSG00000213619	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1040199	1.00[AFR][1000 genomes]
rs10769273	1.00[AFR][1000 genomes]
rs2233358	1.00[AFR][1000 genomes]
rs35920762	1.00[AFR][1000 genomes]
rs6485757	1.00[AFR][1000 genomes]
rs7116487	1.00[AFR][1000 genomes]
rs7118918	1.00[AFR][1000 genomes]
rs7121406	0.83[AFR][1000 genomes]
rs7932169	1.00[AFR][1000 genomes]
rs7933674	1.00[AFR][1000 genomes]
rs7940413	1.00[AFR][1000 genomes]
rs9666418	1.00[AFR][1000 genomes]
rs967829	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47546000-47572400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:47546200-47560400	Weak transcription	Esophagus	oesophagus
3	chr11:47546400-47554200	Weak transcription	Gastric	stomach
4	chr11:47546400-47558000	Weak transcription	Fetal Lung	lung
5	chr11:47546400-47560400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:47546400-47560800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:47546400-47561200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:47546400-47564200	Weak transcription	Thymus	Thymus
9	chr11:47546400-47573400	Weak transcription	Colonic Mucosa	Colon
10	chr11:47546400-47573600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:47546600-47561000	Weak transcription	Stomach Mucosa	stomach
12	chr11:47546800-47559000	Strong transcription	Fetal Intestine Small	intestine
13	chr11:47546800-47560200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:47547000-47557800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:47547200-47555200	Weak transcription	Primary B cells from cord blood	blood
16	chr11:47547200-47559600	Weak transcription	HUVEC	blood vessel
17	chr11:47547400-47554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:47547400-47558000	Weak transcription	Small Intestine	intestine
19	chr11:47547400-47560400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:47547400-47560800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:47547600-47554200	Weak transcription	HSMM	muscle
22	chr11:47547800-47554400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:47547800-47555000	Weak transcription	Right Ventricle	heart
24	chr11:47547800-47562000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:47548200-47560400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:47549000-47559400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:47549200-47556400	Weak transcription	Primary T cells from cord blood	blood
28	chr11:47550000-47556400	Weak transcription	A549	lung
29	chr11:47550400-47559200	Weak transcription	NHEK	skin
30	chr11:47550600-47561000	Weak transcription	Placenta	Placenta
31	chr11:47550800-47558000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:47551000-47563200	Enhancers	Fetal Brain Male	brain
33	chr11:47551200-47559000	Weak transcription	Psoas Muscle	Psoas
34	chr11:47551400-47554800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:47551400-47555000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:47551400-47557600	Weak transcription	Fetal Thymus	thymus
37	chr11:47551800-47554200	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:47551800-47555000	Enhancers	Fetal Heart	heart
39	chr11:47551800-47555400	Enhancers	Brain Anterior Caudate	brain
40	chr11:47552000-47554800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr11:47552000-47555600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:47552200-47554400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr11:47552200-47555600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr11:47552200-47556000	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:47552200-47560400	Weak transcription	HMEC	breast
46	chr11:47552400-47554200	Weak transcription	Brain Germinal Matrix	brain
47	chr11:47552400-47554200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:47552400-47555000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:47552400-47556800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:47552600-47555800	Enhancers	Liver	Liver

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