Variant report

Variant	rs10160392
Chromosome Location	chr11:56027115-56027116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11227518	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12270268	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17530416	1.00[CEU][hapmap]
rs17530423	1.00[CEU][hapmap]
rs17531417	1.00[CEU][hapmap]
rs17541821	1.00[CEU][hapmap]
rs17541876	1.00[CEU][hapmap]
rs17542961	1.00[CEU][hapmap]
rs17603260	1.00[CEU][hapmap]
rs17610726	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap]
rs17614327	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs17627302	1.00[CEU][hapmap]
rs1947923	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs2035396	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035397	1.00[EUR][1000 genomes]
rs2035398	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170446	1.00[CEU][hapmap]
rs2449138	0.80[AMR][1000 genomes]
rs2512961	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2870138	1.00[CEU][hapmap]
rs56149224	1.00[EUR][1000 genomes]
rs61887243	0.98[EUR][1000 genomes]
rs7106248	1.00[CEU][hapmap]
rs7109807	0.90[CEU][hapmap]
rs7111634	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs7113176	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7113418	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7118367	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7119253	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7123108	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs7125690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7927015	0.90[CEU][hapmap]
rs7942730	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
6	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	esv3379598	chr11:56020228-56043618	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56027000-56028400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links