Variant report

Variant	rs10160518
Chromosome Location	chr11:76296671-76296672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11236791	0.84[EUR][1000 genomes]
rs11236795	0.95[ASN][1000 genomes]
rs11236797	0.84[EUR][1000 genomes]
rs2155219	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4494327	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893460	0.82[EUR][1000 genomes]
rs7110818	0.82[EUR][1000 genomes]
rs7114362	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7126418	0.82[EUR][1000 genomes]
rs7936312	0.87[EUR][1000 genomes]
rs7936323	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7936434	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76291200-76299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:76291600-76299800	Weak transcription	Lung	lung
3	chr11:76294800-76299600	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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