Variant report

Variant	rs10160556
Chromosome Location	chr11:17829551-17829552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1005008	0.88[EUR][1000 genomes]
rs10766440	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832860	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1236206	0.97[ASN][1000 genomes]
rs1548528	0.90[EUR][1000 genomes]
rs2079227	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2158396	0.82[EUR][1000 genomes]
rs2237943	0.87[EUR][1000 genomes]
rs2237944	0.88[EUR][1000 genomes]
rs2237946	0.89[EUR][1000 genomes]
rs2237948	0.90[EUR][1000 genomes]
rs2237950	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237952	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283250	0.96[ASN][1000 genomes]
rs2283251	0.95[ASN][1000 genomes]
rs2299634	0.95[ASN][1000 genomes]
rs3802969	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802970	0.96[ASN][1000 genomes]
rs4757589	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486398	0.84[EUR][1000 genomes]
rs7110010	0.95[ASN][1000 genomes]
rs718439	0.90[EUR][1000 genomes]
rs765989	0.90[EUR][1000 genomes]
rs999420	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17802800-17832400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:17806000-17837800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
5	chr11:17808800-17834600	Weak transcription	Aorta	Aorta
6	chr11:17809000-17833200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:17811000-17830800	Weak transcription	Primary T cells from cord blood	blood
8	chr11:17815600-17841400	Weak transcription	HepG2	liver
9	chr11:17818600-17843200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:17820800-17832600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:17821200-17831800	Weak transcription	Esophagus	oesophagus
12	chr11:17824400-17830200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:17825400-17843400	Weak transcription	Lung	lung
14	chr11:17825600-17832400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:17825800-17832000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:17826000-17832400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:17826600-17832200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:17826800-17829600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:17827000-17829600	Enhancers	Fetal Heart	heart
20	chr11:17827400-17829800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:17827600-17829600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:17827800-17829800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:17828200-17829600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:17828200-17829600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:17828200-17831400	Weak transcription	Psoas Muscle	Psoas
26	chr11:17828400-17831600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:17828600-17829600	Enhancers	Fetal Brain Female	brain
28	chr11:17828800-17831600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:17829000-17829600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:17829000-17832400	Weak transcription	Fetal Brain Male	brain
31	chr11:17829200-17829600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:17829200-17831200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:17829200-17831800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:17829200-17831800	Weak transcription	Left Ventricle	heart
35	chr11:17829200-17832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:17829200-17832200	Weak transcription	Fetal Stomach	stomach
37	chr11:17829200-17832400	Weak transcription	Brain Anterior Caudate	brain
38	chr11:17829200-17833400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:17829400-17829800	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr11:17829400-17831400	Weak transcription	HSMMtube	muscle
41	chr11:17829400-17831600	Weak transcription	Right Atrium	heart
42	chr11:17829400-17831600	Weak transcription	Right Ventricle	heart
43	chr11:17829400-17832200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:17829400-17832200	Weak transcription	Brain Angular Gyrus	brain
45	chr11:17829400-17833400	Weak transcription	Gastric	stomach
46	chr11:17829400-17833600	Weak transcription	Fetal Intestine Large	intestine

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