Variant report

Variant	rs10161060
Chromosome Location	chr12:39475622-39475623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10161061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834108	1.00[EUR][1000 genomes]
rs11835220	1.00[EUR][1000 genomes]
rs11835264	1.00[EUR][1000 genomes]
rs11835267	1.00[EUR][1000 genomes]
rs11837746	1.00[EUR][1000 genomes]
rs34286441	1.00[EUR][1000 genomes]
rs57432069	1.00[EUR][1000 genomes]
rs57586482	1.00[EUR][1000 genomes]
rs57806536	1.00[EUR][1000 genomes]
rs73264505	1.00[EUR][1000 genomes]
rs73264519	1.00[EUR][1000 genomes]
rs960872	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv21411	chr12:39458222-39478357	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv678	chr12:39465797-39489396	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3693120	chr12:39466733-39475829	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv832374	chr12:39468434-39630369	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39475600-39476000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:39475600-39476000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links