Variant report

Variant	rs10169028
Chromosome Location	chr2:128127704-128127705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128126951..128129831-chr2:128134353..128136995,2	K562	blood:
2	chr2:128112442..128114326-chr2:128127386..128129324,2	MCF-7	breast:
3	chr2:128127577..128130278-chr2:128132322..128133910,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10178188	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195774	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206392	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10211382	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221754	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439213	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439214	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451530	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1128974	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129121	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385611	0.80[ASN][1000 genomes]
rs13406313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421256	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424947	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13431911	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1607437	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271026	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755310	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4150448	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150487	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150507	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150512	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150515	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55826634	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56276844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011781	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57547812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878090	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283013	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710541	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727155	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740067	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740368	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6743815	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750648	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72956480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956485	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964335	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964338	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964344	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964352	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964361	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564189	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584829	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7586961	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878461	0.95[EUR][1000 genomes]
rs908787	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9808452	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128107800-128140200	Weak transcription	Gastric	stomach
2	chr2:128109800-128134000	Weak transcription	Lung	lung
3	chr2:128110200-128127800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:128120800-128139200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:128120800-128142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:128121200-128135200	Weak transcription	Osteobl	bone
7	chr2:128122200-128127800	Weak transcription	Ovary	ovary
8	chr2:128122200-128128000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:128122200-128142200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:128123400-128127800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:128123400-128127800	Weak transcription	Aorta	Aorta
12	chr2:128123400-128128200	Weak transcription	Right Ventricle	heart
13	chr2:128123400-128130400	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:128123400-128131400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:128123400-128135200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:128123400-128137600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:128123400-128140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:128123400-128144200	Weak transcription	Colonic Mucosa	Colon
19	chr2:128123600-128127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:128123600-128127800	Weak transcription	Psoas Muscle	Psoas
21	chr2:128123600-128128800	Weak transcription	Primary T cells from cord blood	blood
22	chr2:128123800-128128000	Weak transcription	Adipose Nuclei	Adipose
23	chr2:128124000-128140000	Weak transcription	Left Ventricle	heart
24	chr2:128124400-128136200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:128124800-128129200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:128125200-128131000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr2:128125400-128131200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:128125800-128127800	Weak transcription	Right Atrium	heart
29	chr2:128125800-128128200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:128125800-128136400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr2:128127200-128127800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr2:128127200-128128400	ZNF genes & repeats	Fetal Muscle Leg	muscle
33	chr2:128127200-128128400	ZNF genes & repeats	Fetal Thymus	thymus
34	chr2:128127200-128129000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr2:128127200-128130000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:128127200-128131000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr2:128127200-128132000	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr2:128127200-128135600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:128127200-128136000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:128127400-128128000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr2:128127400-128128000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
42	chr2:128127400-128128200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr2:128127400-128128400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr2:128127400-128134800	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr2:128127600-128127800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:128127600-128127800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
47	chr2:128127600-128127800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
48	chr2:128127600-128128000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:128127600-128128000	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr2:128127600-128128000	ZNF genes & repeats	Fetal Stomach	stomach

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