Variant report
Variant | rs10170218 |
---|---|
Chromosome Location | chr2:188814444-188814445 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10221619 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11694190 | 0.96[ASN][1000 genomes] |
rs12104454 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12105426 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16829428 | 0.98[ASN][1000 genomes] |
rs16829431 | 0.95[ASN][1000 genomes] |
rs16829435 | 0.98[ASN][1000 genomes] |
rs4145364 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
rs4145365 | 0.91[ASN][1000 genomes] |
rs4299304 | 0.83[ASN][1000 genomes] |
rs57266241 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs62182875 | 0.96[ASN][1000 genomes] |
rs62182877 | 0.98[ASN][1000 genomes] |
rs62182903 | 0.97[ASN][1000 genomes] |
rs62182904 | 0.95[ASN][1000 genomes] |
rs6713111 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
rs72899699 | 0.81[ASN][1000 genomes] |
rs7581351 | 0.88[ASN][1000 genomes] |
rs7595490 | 0.88[ASN][1000 genomes] |
rs7607915 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533353 | chr2:188498301-189024655 | Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv875597 | chr2:188573244-188916290 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1011832 | chr2:188631943-188896492 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv536087 | chr2:188631943-188896492 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv584041 | chr2:188644642-188928433 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv523293 | chr2:188774681-188928433 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv875599 | chr2:188780717-188833306 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:188812600-188827400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |