Variant report

Variant	rs10172938
Chromosome Location	chr2:210663218-210663219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10175106	1.00[AFR][1000 genomes]
rs10183823	1.00[AFR][1000 genomes]
rs13422135	1.00[AFR][1000 genomes]
rs13424532	0.84[AFR][1000 genomes]
rs2159748	0.84[AFR][1000 genomes]
rs28450018	0.90[AFR][1000 genomes]
rs6733067	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210659400-210663400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210661200-210671000	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210662200-210664000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210662400-210663800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210662600-210670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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