Variant report
| Variant | rs10173858 |
|---|---|
| Chromosome Location | chr2:37393392-37393393 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:37382496..37385502-chr2:37391173..37393698,3 | K562 | blood: | |
| 2 | chr2:37392690..37395539-chr2:37397439..37400385,2 | K562 | blood: | |
| 3 | chr2:37390704..37393627-chr2:37422874..37425505,2 | K562 | blood: | |
| 4 | chr2:37384110..37386045-chr2:37392085..37394619,2 | MCF-7 | breast: | |
| 5 | chr2:37387188..37389991-chr2:37393391..37396132,3 | MCF-7 | breast: | |
| 6 | chr2:37382322..37385253-chr2:37392410..37395153,2 | MCF-7 | breast: | |
| 7 | chr2:37375543..37378467-chr2:37391547..37394733,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000055332 | Chromatin interaction |
| ENSG00000224891 | Chromatin interaction |
| ENSG00000138068 | Chromatin interaction |
| ENSG00000218739 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10181241 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10204828 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28428996 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4670667 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4670668 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6734946 | 0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
