Variant report

Variant	rs10174744
Chromosome Location	chr2:210703778-210703779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170320	0.80[YRI][hapmap]
rs10205545	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843887	1.00[EUR][1000 genomes]
rs16843890	1.00[EUR][1000 genomes]
rs16843979	0.87[AMR][1000 genomes]
rs16843983	0.87[AMR][1000 genomes]
rs16843987	0.87[AMR][1000 genomes]
rs16843990	0.87[AMR][1000 genomes]
rs6707821	1.00[EUR][1000 genomes]
rs6725313	0.92[YRI][hapmap]
rs6758085	0.87[AMR][1000 genomes]
rs73078916	1.00[EUR][1000 genomes]
rs7562016	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv3331303	chr2:210701957-210704555	Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210680000-210706800	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210683600-210704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:210683800-210704200	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210685800-210708400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210686000-210720400	Weak transcription	Brain Angular Gyrus	brain
7	chr2:210686200-210704000	Weak transcription	Fetal Brain Female	brain
8	chr2:210686400-210703800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210686400-210705200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:210699800-210704000	Weak transcription	Brain Anterior Caudate	brain
11	chr2:210700000-210704000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:210701800-210704000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210702400-210710000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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