Variant report
| Variant | rs10177859 |
|---|---|
| Chromosome Location | chr2:37748574-37748575 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:37748014..37749874-chr2:37757456..37760173,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10084269 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10165975 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10177794 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10180573 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10184286 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11124588 | 0.85[ASN][1000 genomes] |
| rs12472489 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13407307 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4274577 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4352210 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4387769 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4430920 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4461243 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4538180 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4670726 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4670727 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62135619 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62135620 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6544089 | 0.81[ASN][1000 genomes] |
| rs6544090 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6759677 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7559976 | 0.83[ASN][1000 genomes] |
| rs7589042 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7593076 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9309009 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9309010 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833814 | chr2:37643132-37840247 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv456374 | chr2:37669487-37868214 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv470453 | chr2:37669487-37868214 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv581473 | chr2:37669487-37868214 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:37743200-37749000 | Weak transcription | Fetal Heart | heart |
| 2 | chr2:37744600-37751200 | Weak transcription | Psoas Muscle | Psoas |
