Variant report

Variant	rs10177883
Chromosome Location	chr2:180575987-180575988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180570219..180572499-chr2:180575315..180576925,2	K562	blood:
2	chr2:180564927..180567681-chr2:180575741..180577246,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12467122	0.80[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs13407248	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1462208	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs1515294	0.87[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16866934	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16866936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16866942	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16866943	0.85[EUR][1000 genomes]
rs16866944	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16866945	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs16866953	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs17496658	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17499149	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17499156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1964081	0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs2840142	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56142641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58143036	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59431424	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59642995	0.82[ASN][1000 genomes]
rs61200535	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73973703	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746701	0.82[CEU][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes]
rs7559882	0.87[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap]
rs7582108	0.94[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7584651	0.82[ASN][1000 genomes]
rs7584968	0.82[ASN][1000 genomes]
rs881737	0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180571600-180577600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180572600-180582200	Weak transcription	Right Atrium	heart
3	chr2:180573000-180576000	Weak transcription	Gastric	stomach
4	chr2:180573200-180576800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr2:180574000-180576400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:180575200-180576000	Enhancers	Placenta	Placenta
7	chr2:180575400-180576400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:180575600-180576000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:180575600-180576000	Enhancers	NHEK	skin
10	chr2:180575800-180576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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