Variant report
| Variant | rs10178791 |
|---|---|
| Chromosome Location | chr2:182634032-182634033 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260742 | Chromatin interaction |
| ENSG00000138434 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10173295 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10183369 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11884484 | 1.00[AMR][1000 genomes] |
| rs11884530 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11898883 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11904481 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13385387 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13404097 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13412336 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13415704 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13431885 | 0.83[AFR][1000 genomes] |
| rs28730957 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56043868 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59024368 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59405729 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73030974 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73030984 | 1.00[AMR][1000 genomes] |
| rs9288070 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9288071 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9288072 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9630973 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9630988 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005870 | chr2:181968637-182921439 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv536063 | chr2:181968637-182921439 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001558 | chr2:182590009-182732738 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
